YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224584983, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224584983, gi....

Description	E-value	Query Range	Subject Range
gi\|16766482, gi\|... - gi\|16766482\|ref\|NP_462097.1\| esterase YqiA [Salmonella typhimurium LT2], gi\|16421738\|gb\|AAL22056.1\| ...	6.0E-35	[1..193]	[1..193]
gi\|28805412 - gi\|28805412\|dbj\|BAC58692.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149746312, gi... - gi\|153840092\|ref\|ZP_01992759.1\| esterase YqiA [Vibrio parahaemolyticus AQ3810], gi\|149746312\|gb\|EDM5... gi\|28897203, gi\|... - gi\|28897203\|ref\|NP_796808.1\| esterase YqiA [Vibrio parahaemolyticus RIMD 2210633], gi\|28805412\|dbj\|B...	1.0E-33	[4..190]	[7..194]
gi\|254794988, gi... - gi\|254794988\|ref\|YP_003079825.1\| esterase [Escherichia coli O157:H7 str. TW14359], gi\|254594388\|gb\|A... gi\|253974881, gi... - gi\|254162980\|ref\|YP_003046088.1\| predicted esterase [Escherichia coli B str. REL606], gi\|253974881\|g... gi\|226839824, gi... - gi\|254038200\|ref\|ZP_04872258.1\| esterase yqiA [Escherichia sp. 1_1_43], gi\|226839824\|gb\|EEH71845.1\| ... gi\|253323175, gi... - gi\|254289730\|ref\|YP_003055478.1\| predicted esterase [Escherichia coli BL21(DE3)], gi\|253979037\|gb\|AC... YQIA_ECOLI - Esterase yqiA (EC 3.1.-.-) - Escherichia coli gi\|242378583, gi... - gi\|251786310\|ref\|YP_003000614.1\| hypothetical protein B21_02853 [Escherichia coli BL21], gi\|24237858... gi\|238902144, gi... - gi\|238902144\|ref\|YP_002927940.1\| putative esterase [Escherichia coli BW2952], gi\|238862372\|gb\|ACR643... gi\|237706210, gi... - gi\|237706210\|ref\|ZP_04536691.1\| esterase YqiA [Escherichia sp. 3_2_53FAA], gi\|226899250\|gb\|EEH85509.... gi\|91074031, gi\|... - gi\|91212457\|ref\|YP_542443.1\| esterase YqiA [Escherichia coli UTI89], gi\|91074031\|gb\|ABE08912.1\| hypo... gi\|227835146, gi... - gi\|227887750\|ref\|ZP_04005555.1\| esterase YqiA [Escherichia coli 83972], gi\|227835146\|gb\|EEJ45612.1\| ... gi\|13363392, gi\|... - gi\|15833173\|ref\|NP_311946.1\| esterase YqiA [Escherichia coli O157:H7 str. Sakai], gi\|13363392\|dbj\|BA... gi\|110643277, gi... - gi\|110643277\|ref\|YP_671007.1\| esterase YqiA [Escherichia coli 536], gi\|110344869\|gb\|ABG71106.1\| hypo... gi\|110616472, gi... - gi\|110806924\|ref\|YP_690444.1\| esterase YqiA [Shigella flexneri 5 str. 8401], gi\|110616472\|gb\|ABF0513... gi\|208820326, gi... - gi\|208820326\|ref\|ZP_03260646.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4042], gi\|208740449\|g... gi\|209400424, gi... - gi\|209400424\|ref\|YP_002272510.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4115], gi\|209161824\|... gi\|209913762, gi... - gi\|209920503\|ref\|YP_002294587.1\| esterase YqiA [Escherichia coli SE11], gi\|209913762\|dbj\|BAG78836.1\|... gi\|215266436, gi... - gi\|215488364\|ref\|YP_002330795.1\| esterase YqiA [Escherichia coli O127:H6 str. E2348/69], gi\|21526643... gi\|217326800, gi... - gi\|217326800\|ref\|ZP_03442883.1\| esterase YqiA [Escherichia coli O157:H7 str. TW14588], gi\|217319167\|... gi\|218555601, gi... - gi\|218555601\|ref\|YP_002388514.1\| esterase YqiA [Escherichia coli IAI1], gi\|218362369\|emb\|CAQ99993.1\|... gi\|218366885, gi... - gi\|218560116\|ref\|YP_002393029.1\| esterase YqiA [Escherichia coli S88], gi\|218366885\|emb\|CAR04655.1\| ... gi\|218691334, gi... - gi\|218691334\|ref\|YP_002399546.1\| esterase YqiA [Escherichia coli ED1a], gi\|218428898\|emb\|CAR09701.1\|... gi\|168797624, gi... - gi\|189379715\|gb\|EDU98131.1\| esterase YqiA [Escherichia coli O157:H7 str. EC508], gi\|168797624\|ref\|ZP... gi\|170018715, gi... - gi\|170018715\|ref\|YP_001723669.1\| esterase YqiA [Escherichia coli ATCC 8739], gi\|169753643\|gb\|ACA7634... gi\|169890409, gi... - gi\|170082574\|ref\|YP_001731894.1\| esterase [Escherichia coli str. K-12 substr. DH10B], gi\|169890409\|g... gi\|170684219, gi... - gi\|170684219\|ref\|YP_001745305.1\| esterase YqiA [Escherichia coli SMS-3-5], gi\|170521937\|gb\|ACB20115.... gi\|194431703, gi... - gi\|194431703\|ref\|ZP_03063994.1\| esterase YqiA [Shigella dysenteriae 1012], gi\|194420059\|gb\|EDX36137.... gi\|195937178 - gi\|195937178\|ref\|ZP_03082560.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4024] gi\|208726509, gi... - gi\|208806708\|ref\|ZP_03249045.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4206], gi\|208726509\|g... gi\|208814541, gi... - gi\|208814541\|ref\|ZP_03255870.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4045], gi\|208735818\|g... gi\|218353469, gi... - gi\|218696737\|ref\|YP_002404404.1\| esterase YqiA [Escherichia coli 55989], gi\|218353469\|emb\|CAU99568.1... gi\|218371791, gi... - gi\|218701805\|ref\|YP_002409434.1\| esterase YqiA [Escherichia coli IAI39], gi\|218371791\|emb\|CAR19644.1... gi\|218433755, gi... - gi\|218706658\|ref\|YP_002414177.1\| esterase YqiA [Escherichia coli UMN026], gi\|218433755\|emb\|CAR14672.... gi\|115514469, gi... - gi\|117625345\|ref\|YP_854670.1\| esterase YqiA [Escherichia coli APEC O1], gi\|115514469\|gb\|ABJ02544.1\| ... gi\|124502160, gi... - gi\|124526056\|ref\|ZP_01698061.1\| protein of unknown function UPF0227 [Escherichia coli B], gi\|1245021... gi\|30042638, gi\|... - gi\|30064381\|ref\|NP_838552.1\| esterase YqiA [Shigella flexneri 2a str. 2457T], gi\|30042638\|gb\|AAP1836... YQIA_ECOL6 - Esterase YqiA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yqiA PE=3 SV=1 EG12186 - acyl CoA esterase / Acyl CoA esterase in vitro, physiological function unknown YQIA_ECO57 - Esterase YqiA OS=Escherichia coli O157:H7 GN=yqiA PE=3 SV=1 gi\|15803578, gi\|... - gi\|15803578\|ref\|NP_289611.1\| esterase YqiA [Escherichia coli O157:H7 EDL933], gi\|12517609\|gb\|AAG5817... gi\|168747458, gi... - gi\|188017846\|gb\|EDU55968.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4113], gi\|168747458\|ref\|Z... YQIA_ECOL6 - Esterase yqiA OS=Escherichia coli O6 GN=yqiA PE=3 SV=1 gi\|189358775, gi... - gi\|189358775\|gb\|EDU77194.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4401], gi\|168754002\|ref\|Z... gi\|189369232, gi... - gi\|189369232\|gb\|EDU87648.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4501], gi\|168760193\|ref\|Z... gi\|189363632, gi... - gi\|189363632\|gb\|EDU82051.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4486], gi\|168767055\|ref\|Z... gi\|168773311, gi... - gi\|187770831\|gb\|EDU34675.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4196], gi\|168773311\|ref\|Z... gi\|189000634, gi... - gi\|189000634\|gb\|EDU69620.1\| esterase YqiA [Escherichia coli O157:H7 str. EC4076], gi\|168781908\|ref\|Z... gi\|168785906, gi... - gi\|189373858\|gb\|EDU92274.1\| esterase YqiA [Escherichia coli O157:H7 str. EC869], gi\|168785906\|ref\|ZP... EG12186 - acyl CoA esterase / Acyl CoA esterase in vitro, physiological function unknown gi\|24114332, gi\|... - gi\|24114332\|ref\|NP_708842.1\| esterase YqiA [Shigella flexneri 2a str. 301], gi\|24053493\|gb\|AAN44549.... YQIA_SHIFL - Esterase YqiA OS=Shigella flexneri GN=yqiA PE=3 SV=1 gi\|75259969, gi\|... - gi\|75259969\|ref\|ZP_00731247.1\| COG3150: Predicted esterase [Escherichia coli E22], gi\|193061995\|ref\|... gi\|188494544, gi... - gi\|75515176\|ref\|ZP_00737360.1\| COG3150: Predicted esterase [Escherichia coli 53638], gi\|188494544\|re... gi\|75239393, gi\|... - gi\|75239393\|ref\|ZP_00723364.1\| COG3150: Predicted esterase [Escherichia coli E110019], gi\|193067455\|... gi\|75240502, gi\|... - gi\|75240502\|ref\|ZP_00724430.1\| COG3150: Predicted esterase [Escherichia coli F11], gi\|191172502\|ref\|... gi\|81246699, gi\|... - gi\|82545288\|ref\|YP_409235.1\| esterase YqiA [Shigella boydii Sb227], gi\|81246699\|gb\|ABB67407.1\| conse... gi\|89109801, gi\|... - gi\|89109801\|ref\|AP_003581.1\| predicted esterase [Escherichia coli str. K-12 substr. W3110], gi\|85675... gi\|74313569, gi\|... - gi\|74313569\|ref\|YP_311988.1\| esterase YqiA [Shigella sonnei Ss046], gi\|73857046\|gb\|AAZ89753.1\| conse... gi\|81242508, gi\|... - gi\|82778360\|ref\|YP_404709.1\| esterase YqiA [Shigella dysenteriae Sd197], gi\|81242508\|gb\|ABB63218.1\| ... gi\|194424210, gi... - gi\|83587528\|ref\|ZP_00926155.1\| COG3150: Predicted esterase [Escherichia coli 101-1], gi\|194436728\|re... gi\|75212331, gi\|... - gi\|75212331\|ref\|ZP_00712355.1\| COG3150: Predicted esterase [Escherichia coli B171], gi\|194426163\|ref... gi\|75229289, gi\|... - gi\|75229289\|ref\|ZP_00715848.1\| COG3150: Predicted esterase [Escherichia coli B7A], gi\|191167557\|ref\|... gi\|75187846, gi\|... - gi\|75187846\|ref\|ZP_00701113.1\| COG3150: Predicted esterase [Escherichia coli E24377A], gi\|157158315\|... gi\|157068187, gi... - gi\|75196988\|ref\|ZP_00707058.1\| COG3150: Predicted esterase [Escherichia coli HS], gi\|157162507\|ref\|Y...	5.0E-33	[1..191]	[1..191]
gi\|75814079, gi\|... - gi\|75814079\|ref\|ZP_00744725.1\| COG3150: Predicted esterase [Vibrio cholerae V52], gi\|121730251\|ref\|Z... gi\|229335435, gi... - gi\|229527038\|ref\|ZP_04416433.1\| hypothetical protein VCG_000104 [Vibrio cholerae 12129(1)], gi\|22933... gi\|75827697, gi\|... - gi\|75827697\|ref\|ZP_00757132.1\| COG3150: Predicted esterase [Vibrio cholerae O395], gi\|227118874\|ref\|... gi\|229337998, gi... - gi\|229524417\|ref\|ZP_04413822.1\| hypothetical protein VCA_002009 [Vibrio cholerae bv. albensis VL426]... gi\|148873415, gi... - gi\|153831109\|ref\|ZP_01983776.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887341... gi\|153827247, gi... - gi\|153827247\|ref\|ZP_01979914.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149738861... gi\|229521259, gi... - gi\|229521259\|ref\|ZP_04410679.1\| hypothetical protein VIF_001787 [Vibrio cholerae TM 11079-80], gi\|22... tr\|D7HEJ9\|D7HEJ9... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03433 PE=4 SV=1	6.0E-33	[2..190]	[6..195]
gi\|254849556, gi... - gi\|75828637\|ref\|ZP_00758002.1\| COG3150: Predicted esterase [Vibrio cholerae MO10], gi\|254849556\|ref\|... gi\|9657008, gi\|1... - gi\|9657008\|gb\|AAF95575.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|227010441, gi... - gi\|227082553\|ref\|YP_002811104.1\| putative Esterase [Vibrio cholerae M66-2], gi\|227010441\|gb\|ACP06653... gi\|153225098, gi... - gi\|153225098\|ref\|ZP_01954691.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241173... gi\|229507508, gi... - gi\|229507508\|ref\|ZP_04397013.1\| hypothetical protein VCF_002737 [Vibrio cholerae BX 330286], gi\|2293... gi\|153820159, gi... - gi\|153820159\|ref\|ZP_01972826.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|229352261, gi... - gi\|229512296\|ref\|ZP_04401775.1\| hypothetical protein VCE_003708 [Vibrio cholerae B33], gi\|229352261\|... gi\|229519433, gi... - gi\|229519433\|ref\|ZP_04408876.1\| hypothetical protein VCC_003463 [Vibrio cholerae RC9], gi\|229344122\|... gi\|229369669, gi... - gi\|229607014\|ref\|YP_002877662.1\| hypothetical protein VCD_001923 [Vibrio cholerae MJ-1236], gi\|22936... gi\|11354706 - pir\|\|F82076 conserved hypothetical protein VC2432 [imported] - Vibrio cholerae (strain N16961 serogr...	1.0E-32	[2..190]	[6..195]
gi\|187731033, gi... - gi\|75178931\|ref\|ZP_00698967.1\| COG3150: Predicted esterase [Shigella boydii BS512], gi\|187731033\|ref...	1.0E-32	[1..191]	[1..191]
gi\|37527806, gi\|... - gi\|37527806\|ref\|NP_931151.1\| esterase YqiA [Photorhabdus luminescens subsp. laumondii TTO1], gi\|3678...	5.0E-32	[1..192]	[1..192]
gi\|91228379, gi\|... - gi\|91228379\|ref\|ZP_01262306.1\| hypothetical protein V12G01_12410 [Vibrio alginolyticus 12G01], gi\|91...	8.0E-32	[4..190]	[7..194]
gi\|86148730, gi\|... - gi\|86148730\|ref\|ZP_01067005.1\| hypothetical protein MED222_16798 [Vibrio sp. MED222], gi\|85833479\|gb...	1.0E-31	[4..190]	[14..201]
gi\|90415522, gi\|... - gi\|90415522\|ref\|ZP_01223456.1\| hypothetical protein GB2207_09401 [marine gamma proteobacterium HTCC2... gi\|90415522\|ref\|... - hypothetical protein GB2207_09401 [marine gamma proteobacterium HTCC2207]	1.0E-31	[1..188]	[1..191]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLLYLHGF NSSPRSAKAC QLKNWLAERH PHVEMIVPQL PPYPADAAEL LESLVLEHGG  60
   61 APLGLVGSSL GGYYATWLSQ CFMLPAVVVN PAVRPFELLT DYLGQNENPY TGQQYVLESR 120
  121 HIYDLKVMQI DPLEAPDLIW LLQQTGDEVL DYRQAVAYYA SCRQTVTEGG NHAFTGFEDY 180
  181 FNQIVDFLGL HSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1va4A
Description:	Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.39629727416851	bayes_pls_golite062009
hydrolase activity	0.63165630246021	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.0166640502592221	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: