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View Structure Prediction Details

Protein: gi|221323999
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 612 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221323999.

Description E-value Query
Range
Subject
Range
LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus GN=lepA PE=3 SV=1
LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus (strain HTA426) GN=lepA PE=3 SV=1
611.0 [0..5] [610..4]

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Predicted Domain #1
Region A:
Residues: [1-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKEKRLER QSRIRNFSII AHIDHGKSTL ADRILEKTSA ITQREMKEQL LDSMDLERER  60
   61 GITIKLNSVQ LKYKAKDGEE YIFHLIDTPG HVDFTYEVSR SLAACEGAIL VVDAAQGIEA 120
  121 QTLANVYLAL DNDLEILPVI NKIDLPSAEP ERVRQEVEDV IGLDASEAVL ASAKAGIGIE 180
  181 EILEQIVEKV PAPTGDPEAP LKALIFDSLY DAYRGVVAYI RVVEGTVKPG QKIKMMATGK 240
  241 EFEVTEVGVF TPKATPTNEL TVGDVGFLTA SIKNVGDTRV GDTITSAANP AEEALPGYRK 300
  301 LNPMVYCGLY PIDTAKYNDL REALEKLELN DSSLQYEAET SQALGFGFRC GFLGMLHMEI 360
  361 IQERIEREFN IDLITTAPSV IYDVYMTDGE KVVVDNPSNM PDPQKIERVE EPYVKATMMV 420
  421 PNDYVGAVME LCQGKRGNFI DMQYLDANRV SIIYDMPLAE IVYEFFDQLK SSTKGYASFD 480
  481 YELIGYKPSK LVKMDIMLNG EKIDALSFIV HRDYAYERGK VIVEKLKELI PRQQFEVPVQ 540
  541 AAIGQKIVAR STIKAMRKNV LAKCYGGDIS RKRKLLEKQK EGKRRMKQVG SVEVPQEAFM 600
  601 AVLKMDDSPK KQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 1zn0B
Description: Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle