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View Structure Prediction Details

Protein: NDUV2_ARATH
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUV2_ARATH.

Description E-value Query
Range
Subject
Range
gi|73962198 - gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2, 2...
332.0 [0..3] [249..12]

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Predicted Domain #1
Region A:
Residues: [1-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI  60
   61 LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI EVAPIRVYEV ATFYSMFNRA 120
  121 KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM 180
  181 ITVADYSNGS EGYTYNYFED VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL 240
  241 LGEPKPPQFR DLDAC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 2fug2
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 9.90105969982332 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 8.92078442660684 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 8.81403581008074 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 8.78237088091479 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 8.15019987387908 bayes_pls_golite062009
oxidoreductase activity 4.56566449113494 bayes_pls_golite062009
electron carrier activity 1.9747415675561 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.429973830241021 bayes_pls_golite062009
binding 0.39192669546254 bayes_pls_golite062009
protein binding 0.157273259994554 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle