YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168467763, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168467763, gi....

Description	E-value	Query Range	Subject Range
CHIQ_SALTY - Uncharacterized lipoprotein ChiQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|197265696, gi... - gi\|197265696\|ref\|ZP_03165770.1\| YbfN [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|205328886, gi... - gi\|205328886\|gb\|EDZ15650.1\| YbfN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... lcl\|NC_016856.1_... - [gene=ybfN] [protein=putative lipoprotein] [protein_id=YP_005236403.1] [location=751487..751819]	187.0	[0..1]	[110..1]
gi\|197094592, gi... - gi\|197363115\|ref\|YP_002142752.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|167553950, gi... - gi\|205321731\|gb\|EDZ09570.1\| YbfN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29]... gi\|56414192, gi\|... - gi\|56414192\|ref\|YP_151267.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|207856146, gi... - gi\|207856146\|ref\|YP_002242797.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|205271747, gi... - gi\|205351966\|ref\|YP_002225767.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|199602308, gi... - gi\|200389863\|ref\|ZP_03216474.1\| YbfN [Salmonella enterica subsp. enterica serovar Virchow str. SL491... gi\|197940137, gi... - gi\|198245621\|ref\|YP_002214669.1\| YbfN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02...	186.0	[0..1]	[110..1]
gi\|110804681, gi... - gi\|110804681\|ref\|YP_688201.1\| hypothetical protein SFV_0649 [Shigella flexneri 5 str. 8401], gi\|1106...	173.0	[0..1]	[107..7]
gi\|157077608, gi... - gi\|75189710\|ref\|ZP_00702977.1\| hypothetical protein EcolE_01002999 [Escherichia coli E24377A], gi\|15... gi\|192954957, gi... - gi\|75214658\|ref\|ZP_00713175.1\| hypothetical protein EcolE1_01004677 [Escherichia coli E110019], gi\|1... gi\|187427701, gi... - gi\|75175175\|ref\|ZP_00695496.1\| hypothetical protein SboyB_01004671 [Shigella boydii BS512], gi\|18773... gi\|81244527, gi\|... - gi\|82543116\|ref\|YP_407063.1\| hypothetical protein SBO_0544 [Shigella boydii Sb227], gi\|81244527\|gb\|A...	171.0	[0..1]	[107..1]
gi\|13360171, gi\|... - gi\|15829967\|ref\|NP_308740.1\| hypothetical protein ECs0713 [Escherichia coli O157:H7], gi\|13360171\|db... gi\|253325388, gi... - gi\|254287538\|ref\|YP_003053286.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253976845\|gb... gi\|209776772, gi... - pir\|\|A90718 hypothetical protein ECs0713 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|251784172, gi... - gi\|251784172\|ref\|YP_002998476.1\| hypothetical protein B21_00630 [Escherichia coli BL21], gi\|24237644... gi\|12513584, gi\|... - gi\|15800385\|ref\|NP_286397.1\| hypothetical protein Z0830 [Escherichia coli O157:H7 EDL933], gi\|125135... gi\|188013594, gi... - gi\|188013594\|gb\|EDU51716.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16875262... gi\|124529706, gi... - gi\|124529706\|ref\|ZP_01700613.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499709\|gb... gi\|208809537, gi... - gi\|208809537\|ref\|ZP_03251874.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|194440129, gi... - gi\|83584544\|ref\|ZP_00923218.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli 10... gi\|208733075, gi... - gi\|208816427\|ref\|ZP_03257606.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|75511082, gi\|... - gi\|75511082\|ref\|ZP_00733814.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli 53... gi\|208737106, gi... - gi\|208822913\|ref\|ZP_03263231.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|56383252, gi\|... - gi\|56479701\|ref\|NP_706542.2\| hypothetical protein SF0611 [Shigella flexneri 2a str. 301], gi\|5638325... gi\|209397862, gi... - gi\|209397862\|ref\|YP_002269310.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|217324868, gi... - gi\|217324868\|ref\|ZP_03440952.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|218553215, gi... - gi\|218553215\|ref\|YP_002386128.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218359983\|emb\|CAQ9... gi\|218426052, gi... - gi\|218688488\|ref\|YP_002396700.1\| putative lipoprotein [Escherichia coli ED1a], gi\|218426052\|emb\|CAR0... gi\|218694110, gi... - gi\|218694110\|ref\|YP_002401777.1\| putative lipoprotein [Escherichia coli 55989], gi\|218350842\|emb\|CAU... gi\|189355804, gi... - gi\|189355804\|gb\|EDU74223.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875713... gi\|168767122, gi... - gi\|189363568\|gb\|EDU81987.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876712... gi\|189002911, gi... - gi\|189002911\|gb\|EDU71897.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16877916... gi\|168786526, gi... - gi\|189373514\|gb\|EDU91930.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168786526... gi\|170020972, gi... - gi\|170020972\|ref\|YP_001725926.1\| hypothetical protein EcolC_2974 [Escherichia coli ATCC 8739], gi\|16... gi\|187776468, gi... - gi\|187776468\|ref\|ZP_02992964.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|1877... gi\|189404568, gi... - gi\|189404568\|ref\|ZP_03007508.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|1893... gi\|189406345, gi... - gi\|189406345\|ref\|ZP_03008161.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|18937... gi\|218431103, gi... - gi\|218704006\|ref\|YP_002411525.1\| putative lipoprotein [Escherichia coli UMN026], gi\|218431103\|emb\|CA... gi\|13360171, gi\|... - gi\|15829967\|ref\|NP_308740.1\| hypothetical protein ECs0713 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254591234, gi... - gi\|254791834\|ref\|YP_003076671.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|253972651, gi... - gi\|254160750\|ref\|YP_003043858.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397265...	171.0	[0..1]	[107..1]
gi\|30062143, gi\|... - gi\|30062143\|ref\|NP_836314.1\| hypothetical protein S0622 [Shigella flexneri 2a str. 2457T], gi\|300403...	170.0	[0..1]	[107..1]
EG13660 - chitosugar-induced verified lipoprotein / Chitosugar-induced verified lipoprotein, function unknown gi\|4062283, gi\|8... - gi\|89107540\|ref\|AP_001320.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|40... YBFN_ECOLI - Hypothetical lipoprotein ybfN precursor - Escherichia coli gi\|170080351, gi... - gi\|170080351\|ref\|YP_001729671.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16988818... gi\|192930977, gi... - gi\|75258592\|ref\|ZP_00729999.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli E2... gi\|75227332, gi\|... - gi\|75227332\|ref\|ZP_00714115.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli B7... gi\|209911194, gi... - gi\|209917935\|ref\|YP_002292019.1\| hypothetical protein ECSE_0744 [Escherichia coli SE11], gi\|20991119... gi\|194411308, gi... - gi\|75207977\|ref\|ZP_00708405.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli B1... gi\|238899948, gi... - gi\|238899948\|ref\|YP_002925744.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862622\|gb\|ACR... EG13660 - chitosugar-induced verified lipoprotein / Chitosugar-induced verified lipoprotein, function unknown	170.0	[0..1]	[107..1]
gi\|74311210, gi\|... - gi\|74311210\|ref\|YP_309629.1\| hypothetical protein SSON_0636 [Shigella sonnei Ss046], gi\|73854687\|gb\|...	169.0	[0..1]	[107..1]
gi\|191173972, gi... - gi\|75237567\|ref\|ZP_00721598.1\| COG0760: Parvulin-like peptidyl-prolyl isomerase [Escherichia coli F1... gi\|110342493, gi... - gi\|110640901\|ref\|YP_668629.1\| lipoprotein YbfN precursor [Escherichia coli 536], gi\|110342493\|gb\|ABG...	169.0	[0..1]	[107..1]
gi\|157065842, gi... - gi\|75194849\|ref\|ZP_00704919.1\| hypothetical protein EcolH_01000632 [Escherichia coli HS], gi\|1571601...	168.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLIASM TAGLTACASS PAPEEDSRLK EAYSACINTA QGSPEKIEAC QSVLNVLKKE  60
   61 RKHQQFANEE SVRVLDYQQC IQATRTGNDQ AVKADCDKVW QEIRSHNNVQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits