YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207345160
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207345160.

Description	E-value	Query Range	Subject Range
gi\|207345160 - gi\|207345160\|gb\|EDZ72070.1\| YGR081Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406899 - gi\|190406899\|gb\|EDV10166.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] SLX9_YEAST - Ribosome biogenesis protein SLX9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLX9 PE... SLX9 - Protein required for pre-rRNA processing; associated with the 90S pre-ribosome and 43S small ribosom...	4.0E-88	[1..210]	[1..210]

Back

Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAKKRNTLR SKVSARNSQN FGPDVANNGI LDESYDIESD PRAFLHQPKE TKKEKLLNRQ  60
   61 NTFLSNLKGK STLNDGIAAN FDGISKSSIR RRKRKLREEL KPRMQDLLTS LEQEKDLRGI 120
  121 IENSSKDMNN DDDIDMDSKI RFVDTKEMNL KKIEPGSVRI KKNQPNIRNQ KGAKALAANE 180
  181 TARFNQVLTN QDFQKNPFGA LREVIKLQKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits