YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052918
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052918.

Description	E-value	Query Range	Subject Range
gi\|21961124, gi\|... - gi\|22127979\|ref\|NP_671402.1\| recombination protein F [Yersinia pestis KIM], gi\|21961124\|gb\|AAM87653.... gi\|45438596, gi\|... - gi\|45443726\|ref\|NP_995265.1\| recombination protein F [Yersinia pestis biovar Microtus str. 91001], g...	2.0E-58	[1..356]	[80..435]
gi\|167401621, gi... - gi\|167401621\|ref\|ZP_02307115.1\| DNA replication and repair protein recF [Yersinia pestis biovar Anti... gi\|51598225, gi\|... - gi\|51598225\|ref\|YP_072416.1\| recombination protein F [Yersinia pseudotuberculosis IP 32953], gi\|5159... gi\|108814113, gi... - gi\|108814113\|ref\|YP_649880.1\| recombination protein F [Yersinia pestis Nepal516], gi\|108777761\|gb\|AB... gi\|108782044, gi... - gi\|108810131\|ref\|YP_654047.1\| recombination protein F [Yersinia pestis Antiqua], gi\|108782044\|gb\|ABG...	3.0E-58	[1..356]	[67..422]
RECF_SALPK - DNA replication and repair protein RecF OS=Salmonella paratyphi A (strain AKU_12601) GN=recF PE=3 SV... RECF_SALPA - DNA replication and repair protein RecF OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rec... RECF_SALPA - DNA replication and repair protein recF OS=Salmonella paratyphi A GN=recF PE=3 SV=1	1.0E-56	[1..357]	[1..357]
RECF_SALDC - DNA replication and repair protein RecF OS=Salmonella dublin (strain CT_02021853) GN=recF PE=3 SV=1 gi\|197263684, gi... - gi\|197263684\|ref\|ZP_03163758.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ... RECF_SALCH - DNA replication and repair protein RecF OS=Salmonella choleraesuis (strain SC-B67) GN=recF PE=3 SV=1 RECF_SALA4 - DNA replication and repair protein RecF OS=Salmonella agona (strain SL483) GN=recF PE=3 SV=1 gi\|205350391, gi... - gi\|205350391\|gb\|EDZ37022.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|205332587, gi... - gi\|205332587\|gb\|EDZ19351.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|238913089 - gi\|238913089\|ref\|ZP_04656926.1\| recombination protein F [Salmonella enterica subsp. enterica serovar... RECF_SALCH - DNA replication and repair protein recF OS=Salmonella choleraesuis GN=recF PE=3 SV=1 RECF_SALCH - DNA replication and repair protein recF OS=Salmonella choleraesuis GN=recF PE=3 SV=1 RECF_SALPC - DNA replication and repair protein RecF OS=Salmonella paratyphi C (strain RKS4594) GN=recF PE=3 SV=1 RECF_SALEP - DNA replication and repair protein RecF OS=Salmonella enteritidis PT4 (strain P125109) GN=recF PE=3 ... RECF_SALG2 - DNA replication and repair protein RecF OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rec...	1.0E-56	[1..357]	[1..357]
gi\|238783050, gi... - gi\|77958159\|ref\|ZP_00822197.1\| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Yersinia b...	2.0E-56	[1..356]	[1..356]
RECF_SALTY - DNA replication and repair protein RecF OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... RECF_SALTY - DNA replication and repair protein recF OS=Salmonella typhimurium GN=recF PE=3 SV=3 lcl\|NC_016856.1_... - [gene=recF] [protein=recombination protein F] [protein_id=YP_005240102.1] [location=complement(40549... gi\|205338680, gi... - gi\|205338680\|gb\|EDZ25444.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|167992429, gi... - gi\|205329422\|gb\|EDZ16186.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ente... gi\|200387747, gi... - gi\|200387747\|ref\|ZP_03214359.1\| DNA replication and repair protein RecF [Salmonella enterica subsp. ... RECF_SALTY - DNA replication and repair protein recF OS=Salmonella typhimurium GN=recF PE=3 SV=3 RECF_SALHS - DNA replication and repair protein RecF OS=Salmonella heidelberg (strain SL476) GN=recF PE=3 SV=1 RECF_SALNS - DNA replication and repair protein RecF OS=Salmonella newport (strain SL254) GN=recF PE=3 SV=1	2.0E-56	[1..357]	[1..357]
gi\|238718259, gi... - gi\|77961787\|ref\|ZP_00825617.1\| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Yersinia m...	3.0E-56	[1..356]	[1..356]
gi\|151937139, gi... - gi\|75854672\|ref\|ZP_00762350.1\| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Vibrio sp....	5.0E-56	[1..356]	[1..357]
RECF_VIBVU - DNA replication and repair protein recF OS=Vibrio vulnificus GN=recF PE=3 SV=1 RECF_VIBVU - DNA replication and repair protein RecF OS=Vibrio vulnificus (strain CMCP6) GN=recF PE=3 SV=1	7.0E-56	[1..356]	[1..357]
gi\|91188106, gi\|... - gi\|91228346\|ref\|ZP_01262274.1\| recombination protein F [Vibrio alginolyticus 12G01], gi\|91188106\|gb\|...	7.0E-56	[1..356]	[1..357]

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Predicted Domain #1

Region A:
Residues: [1-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRLLIKD FRNIENADLA LSPGFNFLVG ANGSGKTSVL EAIYTLGHGR AFRSLQPGRV  60
   61 IRHEQEAFVL HGRLQGEERE TSIGLTKDKQ GDSKVRIDGT DGHKIAELAH LMPMQLITPE 120
  121 GFTLLNGGPK YRRAFLDWGC FHNEAGFFTA WSNLKRLLKQ RNAALRQVSR YEQLRPWDKE 180
  181 LIPLAEQIST WRAEYSSAIA QDMADTCQQF LPEFSLTFSF QRGWEKETDY ADVLERSFER 240
  241 DRMLTYTAHG PHKADFRIRA DGAPVEDTLS RGQLKLLMCA LRLAQGEFLT RESGRRCLYL 300
  301 IDDFASELDD ARRGLLASRL KATQSQVFVS AISAEHVIDM SDENSKMFTV EKGKITD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	2o5vA
Description:	No description for 2o5vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits