YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197093142, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197093142, gi....

Description	E-value	Query Range	Subject Range
gi\|62128576, gi\|... - gi\|62180943\|ref\|YP_217360.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se...	0.0	[29..333]	[1..305]
gi\|218370783, gi... - gi\|218700797\|ref\|YP_002408426.1\| flagella biosynthesis regulator [Escherichia coli IAI39], gi\|218370... gi\|26248710, gi\|... - gi\|26248710\|ref\|NP_754750.1\| flagella biosynthesis regulator [Escherichia coli CFT073], gi\|26109115\|...	0.0	[1..332]	[2..330]
gi\|110344117, gi... - gi\|110642525\|ref\|YP_670255.1\| flagella biosynthesis regulator [Escherichia coli 536], gi\|110344117\|g... gi\|191169918, gi... - gi\|75243132\|ref\|ZP_00726838.1\| hypothetical protein EcolF_01000355 [Escherichia coli F11], gi\|191169... gi\|218690481, gi... - gi\|218690481\|ref\|YP_002398693.1\| flagella biosynthesis regulator [Escherichia coli ED1a], gi\|2184280...	0.0	[1..332]	[2..330]
gi\|218554876, gi... - gi\|218554876\|ref\|YP_002387789.1\| flagella biosynthesis regulator [Escherichia coli IAI1], gi\|2183616... gi\|195183112 - gi\|195183112\|dbj\|BAG66672.1\| predicted flagella assembly protein [Escherichia coli O111:H-] gi\|82544802, gi\|... - gi\|82544802\|ref\|YP_408749.1\| flagella biosynthesis regulator [Shigella boydii Sb227], gi\|81246213\|gb... gi\|209919821, gi... - gi\|209919821\|ref\|YP_002293905.1\| flagella biosynthesis regulator [Escherichia coli SE11], gi\|2099130... gi\|194432943, gi... - gi\|83570069\|ref\|ZP_00921516.1\| hypothetical protein Sdys1_01001660 [Shigella dysenteriae 1012], gi\|1... gi\|75235527, gi\|... - gi\|75235527\|ref\|ZP_00719718.1\| hypothetical protein EcolE1_01002706 [Escherichia coli E110019], gi\|1... gi\|192931916, gi... - gi\|75259780\|ref\|ZP_00731082.1\| hypothetical protein EcolE2_01000697 [Escherichia coli E22], gi\|19306... gi\|194428602, gi... - gi\|75210135\|ref\|ZP_00710307.1\| hypothetical protein EcolB_01002690 [Escherichia coli B171], gi\|19442... gi\|75231413, gi\|... - gi\|75231413\|ref\|ZP_00717801.1\| hypothetical protein EcolB7_01000567 [Escherichia coli B7A], gi\|19116...	0.0	[1..332]	[2..330]
gi\|74312838, gi\|... - gi\|74312838\|ref\|YP_311257.1\| flagella biosynthesis regulator [Shigella sonnei Ss046], gi\|73856315\|gb...	0.0	[1..332]	[2..330]
gi\|24052762, gi\|... - gi\|24113693\|ref\|NP_708203.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 301], gi\|240... gi\|30042002, gi\|... - gi\|30063747\|ref\|NP_837918.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 2457T], gi\|3...	0.0	[1..332]	[2..330]
gi\|75177890, gi\|... - gi\|75177890\|ref\|ZP_00697952.1\| hypothetical protein SboyB_01002095 [Shigella boydii BS512], gi\|18773...	0.0	[1..332]	[2..330]
gi\|165937146, gi... - gi\|89103379\|ref\|ZP_01175959.1\| hypothetical protein Ypesb_01002604 [Yersinia pestis biovar Orientali... gi\|108779991, gi... - gi\|108808078\|ref\|YP_651994.1\| flagella biosynthesis regulator [Yersinia pestis Antiqua], gi\|10877999... gi\|108775996, gi... - gi\|229902704\|ref\|ZP_04517821.1\| putative flagellar assembly regulatory protein, Flk [Yersinia pestis... gi\|77635307, gi\|... - gi\|77635307\|ref\|ZP_00797393.1\| hypothetical protein YpesA_01001318 [Yersinia pestis Angola], gi\|1624... gi\|153949972, gi... - gi\|77629671\|ref\|ZP_00792257.1\| hypothetical protein YpseI_01001009 [Yersinia pseudotuberculosis IP 3... Q668W4\|Q668W4_YERPS - Putative flagellar assembly regulatory protein, Flk - Yersinia pseudotuberculosis gi\|166008390, gi... - gi\|166008390\|ref\|ZP_02229288.1\| Div protein homolog [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165922778, gi... - gi\|165925171\|ref\|ZP_02221003.1\| Div protein homolog [Yersinia pestis biovar Orientalis str. F1991016... gi\|25358836 - pir\|\|AH0336 probable flagellar assembly regulatory protein, Flk flk [imported] - Yersinia pestis (st... gi\|167398681, gi... - gi\|167398681\|ref\|ZP_02304205.1\| Div protein homolog [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166204564, gi... - gi\|166214208\|ref\|ZP_02240243.1\| Div protein homolog [Yersinia pestis biovar Antiqua str. B42003004],... gi\|45437056, gi\|... - gi\|45442192\|ref\|NP_993731.1\| flagella biosynthesis regulator [Yersinia pestis biovar Microtus str. 9... gi\|149365234, gi... - gi\|149365234\|ref\|ZP_01887269.1\| putative flagellar assembly regulatory protein, Flk [Yersinia pestis... gi\|167424517, gi... - gi\|167424517\|ref\|ZP_02316270.1\| Div protein homolog [Yersinia pestis biovar Mediaevalis str. K197300... gi\|21958384, gi\|... - gi\|22125489\|ref\|NP_668912.1\| flagella biosynthesis regulator [Yersinia pestis KIM], gi\|21958384\|gb\|A... gi\|145210974, gi... - gi\|145599278\|ref\|YP_001163354.1\| flagella biosynthesis regulator [Yersinia pestis Pestoides F], gi\|1... gi\|167421423, gi... - gi\|167421423\|ref\|ZP_02313176.1\| Div protein homolog [Yersinia pestis biovar Orientalis str. MG05-102... gi\|115348443, gi... - gi\|218929832\|ref\|YP_002347707.1\| flagella biosynthesis regulator [Yersinia pestis CO92], gi\|16122964... gi\|186896023, gi... - gi\|186896023\|ref\|YP_001873135.1\| flagella biosynthesis regulator [Yersinia pseudotuberculosis PB1/+]... gi\|51596942, gi\|... - gi\|51596942\|ref\|YP_071133.1\| flagella biosynthesis regulator [Yersinia pseudotuberculosis IP 32953],... gi\|167469272 - gi\|167469272\|ref\|ZP_02333976.1\| hypothetical protein YpesF_15599 [Yersinia pestis FV-1] gi\|229838329, gi... - gi\|229838329\|ref\|ZP_04458488.1\| putative flagellar assembly regulatory protein, Flk [Yersinia pestis... gi\|229895359, gi... - gi\|229895359\|ref\|ZP_04510532.1\| putative flagellar assembly regulatory protein, Flk [Yersinia pestis... gi\|229688443, gi... - gi\|229898895\|ref\|ZP_04514040.1\| putative flagellar assembly regulatory protein, Flk [Yersinia pestis...	0.0	[1..329]	[1..340]
gi\|75196364, gi\|... - gi\|75196364\|ref\|ZP_00706434.1\| hypothetical protein EcolH_01002172 [Escherichia coli HS], gi\|1571618... gi\|218352652, gi... - gi\|218695920\|ref\|YP_002403587.1\| flagella biosynthesis regulator [Escherichia coli 55989], gi\|218352...	0.0	[1..332]	[2..330]
gi\|189372894, gi... - gi\|189372894\|gb\|EDU91310.1\| div protein [Escherichia coli O157:H7 str. EC869], gi\|168787234\|ref\|ZP_0... gi\|168761235, gi... - gi\|189368301\|gb\|EDU86717.1\| div protein [Escherichia coli O157:H7 str. EC4501], gi\|168761235\|ref\|ZP_... gi\|209764762, gi... - pir\|\|F85873 cell division protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|12516683, gi\|... - gi\|15802868\|ref\|NP_288895.1\| flagella biosynthesis regulator [Escherichia coli O157:H7 EDL933], gi\|1... gi\|13362675, gi\|... - gi\|15832459\|ref\|NP_311232.1\| cell division protein [Escherichia coli O157:H7], gi\|13362675\|dbj\|BAB36... gi\|13362675, gi\|... - gi\|15832459\|ref\|NP_311232.1\| flagella biosynthesis regulator [Escherichia coli O157:H7 str. Sakai], ... gi\|217319313, gi... - gi\|217326946\|ref\|ZP_03443029.1\| div protein [Escherichia coli O157:H7 str. TW14588], gi\|217319313\|gb... gi\|168798497, gi... - gi\|189378946\|gb\|EDU97362.1\| div protein [Escherichia coli O157:H7 str. EC508], gi\|168798497\|ref\|ZP_0...	0.0	[1..332]	[2..330]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPISGAPAQ PPGEGRNPLS AASEQPLSMQ QRTVLERLIT RLISLTQQQS AEVWAGMKHD  60
   61 LGIKNDAPLL SRHFPAAEQN LTQRLGVAQQ NHANRQVLSQ LTELLGVGNN RQAVSDFIRQ 120
  121 QYGQTALSQL TPDQLKNVLT LLQQGQLSIP Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQQRPATDRP LLPAEHNTLN QLVTKLAAAT GESNKLIWQS MLELSGVKSG ELIPAKQFTH  60
   61 LATWLQARQT LSLQHAPTLH TLQAALKQPL EPDELTAIKE YAQHTYQIQP QTVLTTAQVQ 120
  121 DLLNHIFLRR VEREADELEP LSIQPIYRPF APMIETVKNL SARPGLLFIA LIIVLALFWL 180
  181 VS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits