YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220949932
Organism:	synthetic construct
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220949932.

Description	E-value	Query Range	Subject Range
Kaz1-ORFB-PH - The gene Kaz1-ORFB is referred to in FlyBase by the symbol Dmel\Kaz1-ORFB (CG1220, FBgn0063923). It ...	210.0	[0..1]	[103..1]
gi\|54641249, gi\|... - gi\|54641249\|gb\|EAL29999.1\| GA17247-PA [Drosophila pseudoobscura], gi\|125976938\|ref\|XP_001352502.1\| G...	80.0	[0..22]	[103..16]
gi\|118779002, gi... - gi\|118779002\|ref\|XP_565460.2\| AGAP006738-PA [Anopheles gambiae str. PEST], gi\|116132651\|gb\|EAL41967.... AGAP006738-PA - \|protein_coding\|2L:37626060:37631679:1\|gene:AGAP006738	65.0	[0..33]	[112..85]
gi\|114053193, gi... - gi\|87248661\|gb\|ABD36383.1\| protease inhibitor 1 [Bombyx mori], gi\|114053193\|ref\|NP_001040294.1\| prot...	63.0	[0..58]	[114..85]
gi\|66524954 - gi\|66524954\|ref\|XP_624838.1\| PREDICTED: similar to CG1220-PE, isoform E [Apis mellifera]	62.0	[0..61]	[114..72]
gi\|56462282 - gi\|56462282\|gb\|AAV91424.1\| protease inhibitor 1 [Lonomia obliqua]	60.0	[0..66]	[112..101]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWIKIFVSG LALLLIGMAQ CYPQFDSENP WLRPRQPTEP TISPNAGGST PANAAPPTTQ  60
   61 SPRYFACFHS CPATSEYNPI CGSDNVNYYN ENKFNCALNC GLNIRKVHKG ICQT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.88
Match:	1uvgA
Description:	Solution structure of the 15th Domain of LEKTI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits