YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195633364, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195633364, gi....

Description	E-value	Query Range	Subject Range
gi\|110806722, gi... - gi\|110806722\|ref\|YP_690242.1\| signal recognition particle protein [Shigella flexneri 5 str. 8401], g...	0.0	[1..453]	[1..453]
gi\|24113948, gi\|... - gi\|24113948\|ref\|NP_708458.1\| signal recognition particle protein [Shigella flexneri 2a str. 301], gi... gi\|30042265, gi\|... - gi\|30064009\|ref\|NP_838180.1\| signal recognition particle protein [Shigella flexneri 2a str. 2457T], ...	0.0	[1..453]	[1..453]
gi\|189367273, gi... - gi\|189367273\|gb\|EDU85689.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC450... gi\|189362137, gi... - gi\|189362137\|gb\|EDU80556.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC448... gi\|187770557, gi... - gi\|187770557\|gb\|EDU34401.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC419... gi\|189003543, gi... - gi\|189003543\|gb\|EDU72529.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC407... gi\|189370881, gi... - gi\|189370881\|gb\|EDU89297.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC869... gi\|168801727, gi... - gi\|189376173\|gb\|EDU94589.1\| signal recognition particle protein [Escherichia coli O157:H7 str. EC508... gi\|169754041, gi... - gi\|170019113\|ref\|YP_001724067.1\| signal recognition particle protein [Escherichia coli ATCC 8739], g... gi\|218355412, gi... - gi\|218547871\|ref\|YP_002381662.1\| signal recognition particle protein [Escherichia fergusonii ATCC 35... gi\|218366299, gi... - gi\|218559530\|ref\|YP_002392443.1\| signal recognition particle protein [Escherichia coli S88], gi\|2183... gi\|218690728, gi... - gi\|218690728\|ref\|YP_002398940.1\| signal recognition particle protein [Escherichia coli ED1a], gi\|218... gi\|218696234, gi... - gi\|218696234\|ref\|YP_002403901.1\| signal recognition particle protein [Escherichia coli 55989], gi\|21... gi\|254794556, gi... - gi\|254794556\|ref\|YP_003079393.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|218706111, gi... - gi\|218706111\|ref\|YP_002413630.1\| signal recognition particle protein [Escherichia coli UMN026], gi\|2... gi\|254162580, gi... - gi\|254162580\|ref\|YP_003045688.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|226839310, gi... - gi\|254037686\|ref\|ZP_04871744.1\| signal recognition particle protein [Escherichia sp. 1_1_43], gi\|226... gi\|253323540, gi... - gi\|254289341\|ref\|YP_003055089.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|251785932, gi... - gi\|251785932\|ref\|YP_003000236.1\| hypothetical protein B21_02463 [Escherichia coli BL21], gi\|24237820... gi\|170082214, gi... - gi\|170082214\|ref\|YP_001731534.1\| Signal recognition particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|238901770, gi... - gi\|238901770\|ref\|YP_002927566.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Es... gi\|208806160, gi... - gi\|208806160\|ref\|ZP_03248497.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|226899842, gi... - gi\|237706802\|ref\|ZP_04537283.1\| signal recognition particle protein [Escherichia sp. 3_2_53FAA], gi\|... EG10300 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) / Signal Recognition Particle (SRP) ... gi\|208735091, gi... - gi\|208813814\|ref\|ZP_03255143.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|227888176, gi... - gi\|227888176\|ref\|ZP_04005981.1\| signal recognition particle protein [Escherichia coli 83972], gi\|227... gi\|208819384, gi... - gi\|208819384\|ref\|ZP_03259704.1\| signal recognition particle protein [Escherichia coli O157:H7 str. E... gi\|209398002, gi... - gi\|209398002\|ref\|YP_002272081.1\| signal recognition particle protein [Escherichia coli O157:H7 str. ... gi\|209913344, gi... - gi\|209920085\|ref\|YP_002294169.1\| signal recognition particle protein [Escherichia coli SE11], gi\|209... gi\|215266032, gi... - gi\|215487960\|ref\|YP_002330391.1\| signal recognition particle protein [Escherichia coli O127:H6 str. ... gi\|217327115, gi... - gi\|217327115\|ref\|ZP_03443198.1\| signal recognition particle protein [Escherichia coli O157:H7 str. T... SRP54_ECOLI, SR5... - Signal recognition particle protein (Fifty-four homolog) (p48) - Escherichia coli, (P07019) Signal r... SRP54_ECOL6 - Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1 gi\|115513956, gi... - gi\|117624832\|ref\|YP_853745.1\| signal recognition particle protein [Escherichia coli APEC O1], gi\|115... gi\|124500901, gi... - gi\|124528009\|ref\|ZP_01699362.1\| signal recognition particle protein [Escherichia coli B], gi\|1245009... gi\|91211944, gi\|... - gi\|91211944\|ref\|YP_541930.1\| signal recognition particle protein [Escherichia coli UTI89], gi\|910735... gi\|15832727, gi\|... - gi\|15832727\|ref\|NP_311500.1\| signal recognition particle protein [Escherichia coli O157:H7 str. Saka... gi\|110344363, gi... - gi\|110642771\|ref\|YP_670501.1\| signal recognition particle protein [Escherichia coli 536], gi\|1103443... gi\|191169064, gi... - gi\|75227659\|ref\|ZP_00714400.1\| COG0541: Signal recognition particle GTPase [Escherichia coli B7A], g... gi\|75258029, gi\|... - gi\|75258029\|ref\|ZP_00729503.1\| COG0541: Signal recognition particle GTPase [Escherichia coli E22], g... gi\|75196624, gi\|... - gi\|75196624\|ref\|ZP_00706694.1\| COG0541: Signal recognition particle GTPase [Escherichia coli HS], gi... gi\|75208556, gi\|... - gi\|75208556\|ref\|ZP_00708869.1\| COG0541: Signal recognition particle GTPase [Escherichia coli B171], ... gi\|82545154, gi\|... - gi\|82545154\|ref\|YP_409101.1\| signal recognition particle protein [Shigella boydii Sb227], gi\|8124656... gi\|85675481, gi\|... - gi\|89109411\|ref\|AP_003191.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Escher... gi\|188489634, gi... - gi\|75513216\|ref\|ZP_00735658.1\| COG0541: Signal recognition particle GTPase [Escherichia coli 53638],... gi\|73856677, gi\|... - gi\|74313200\|ref\|YP_311619.1\| signal recognition particle protein [Shigella sonnei Ss046], gi\|7385667... SRP54_ECOL6 - Signal recognition particle protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... EG10300 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) / Signal Recognition Particle (SRP) ... SRP54_ECO57 - Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1 gi\|187730941, gi... - gi\|75178222\|ref\|ZP_00698281.1\| COG0541: Signal recognition particle GTPase [Shigella boydii BS512], ... gi\|12517035, gi\|... - gi\|15803132\|ref\|NP_289163.1\| signal recognition particle protein [Escherichia coli O157:H7 EDL933], ... gi\|157081263, gi... - gi\|75187357\|ref\|ZP_00700624.1\| COG0541: Signal recognition particle GTPase [Escherichia coli E24377A... gi\|83585222, gi\|... - gi\|83585222\|ref\|ZP_00923871.1\| COG0541: Signal recognition particle GTPase [Escherichia coli 101-1],...	0.0	[1..453]	[1..453]
gi\|56414642, gi\|... - gi\|56414642\|ref\|YP_151717.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|197363569, gi... - gi\|197363569\|ref\|YP_002143206.1\| signal recognition particle protein [Salmonella enterica subsp. ent...	0.0	[1..453]	[1..453]
gi\|82777969, gi\|... - gi\|82777969\|ref\|YP_404318.1\| signal recognition particle protein [Shigella dysenteriae Sd197], gi\|81...	0.0	[1..452]	[1..452]
gi\|120325072, gi... - gi\|77954892\|ref\|ZP_00819276.1\| Signal recognition particle protein [Marinobacter aquaeolei VT8], gi\|...	0.0	[1..452]	[30..481]
gi\|22124802, gi\|... - gi\|22124802\|ref\|NP_668225.1\| signal recognition particle protein [Yersinia pestis KIM], gi\|21957627\|... gi\|166212941, gi... - gi\|166212941\|ref\|ZP_02238976.1\| signal recognition particle protein [Yersinia pestis biovar Antiqua ... gi\|25294421 - pir\|\|AD0400 signal recognition particle protein [imported] - Yersinia pestis (strain CO92) gi\|77635597, gi\|... - gi\|77635597\|ref\|ZP_00797679.1\| COG0541: Signal recognition particle GTPase [Yersinia pestis Angola],... gi\|167399424, gi... - gi\|167399424\|ref\|ZP_02304948.1\| signal recognition particle protein [Yersinia pestis biovar Antiqua ... gi\|218930317, gi... - gi\|218930317\|ref\|YP_002348192.1\| signal recognition particle protein [Yersinia pestis CO92], gi\|1612... gi\|152960549, gi... - gi\|77631805\|ref\|ZP_00794391.1\| COG0541: Signal recognition particle GTPase [Yersinia pseudotuberculo... gi\|166960399, gi... - gi\|167421480\|ref\|ZP_02313233.1\| signal recognition particle protein [Yersinia pestis biovar Oriental... gi\|45440246, gi\|... - gi\|45440246\|ref\|NP_991785.1\| signal recognition particle protein [Yersinia pestis biovar Microtus st... gi\|167057452, gi... - gi\|167423282\|ref\|ZP_02315035.1\| signal recognition particle protein [Yersinia pestis biovar Mediaeva... gi\|145600319, gi... - gi\|145600319\|ref\|YP_001164395.1\| signal recognition particle protein [Yersinia pestis Pestoides F], ... gi\|149289295, gi... - gi\|153997658\|ref\|ZP_02022758.1\| signal recognition particle protein [Yersinia pestis CA88-4125], gi\|... gi\|165915323, gi... - gi\|89103038\|ref\|ZP_01175634.1\| COG0541: Signal recognition particle GTPase [Yersinia pestis biovar O... gi\|108780752, gi... - gi\|108808839\|ref\|YP_652755.1\| signal recognition particle protein [Yersinia pestis Antiqua], gi\|1087... gi\|108810966, gi... - gi\|229901181\|ref\|ZP_04516304.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yer... gi\|165925805, gi... - gi\|165925805\|ref\|ZP_02221637.1\| signal recognition particle protein [Yersinia pestis biovar Oriental... gi\|165991009, gi... - gi\|166010102\|ref\|ZP_02231000.1\| signal recognition particle protein [Yersinia pestis biovar Antiqua ... gi\|229899481, gi... - gi\|229899481\|ref\|ZP_04514623.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yer... gi\|229896398, gi... - gi\|229896398\|ref\|ZP_04511566.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yer... gi\|229838915, gi... - gi\|229838915\|ref\|ZP_04459074.1\| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Yer...	0.0	[1..453]	[1..453]
gi\|77976453, gi\|... - gi\|77976453\|ref\|ZP_00831941.1\| COG0541: Signal recognition particle GTPase [Yersinia intermedia ATCC...	0.0	[1..453]	[1..453]
gi\|49612808, gi\|... - gi\|50122282\|ref\|YP_051449.1\| signal recognition particle protein [Pectobacterium atrosepticum SCRI10...	0.0	[1..453]	[1..453]
gi\|51595183, gi\|... - gi\|51595183\|ref\|YP_069374.1\| signal recognition particle protein [Yersinia pseudotuberculosis IP 329... gi\|186894198, gi... - gi\|186894198\|ref\|YP_001871310.1\| signal recognition particle protein [Yersinia pseudotuberculosis PB... Q66E60\|Q66E60_YERPS - 4.5S-RNP protein (Ffh), GTP binding export factor, part of signal recognition particle with 4.5S RNA...	0.0	[1..453]	[1..453]

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Predicted Domain #1

Region A:
Residues: [1-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDNLTDRLS RTLRNISGRG RLTEDNVKET LREVRMALLE ADVALPVVRE FINRVKEKAV  60
   61 GHEVNKSLTP GQEFVKIVRS ELVAAMGEEN QTLNLAAQPP AVVLMAGLQG AGKTTSVGKL 120
  121 GKFLREKHKK KVLVVSADVY RPAAIKQLET LAEQVGVDFF PSDVGQKPVD IVNAALKEAK 180
  181 LKFYDVLLVD TAGRLHVDEA MMDEIKQVHA SIKPVETLFV VDAMTGQDAA NTAKAFNEAL 240
  241 PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFHPDRI ASRILGMGDV 300
  301 LSLIEDIESK VDRAQAEKLA TKLKKGDGFD LNDFLEQLKQ MKNMGGMASL MGKLPGMGQI 360
  361 PDNVKSQMDD KVLVRMEAII NSMTLKERAK PEIIKGSRKR RIAQGCGMQV QDVNRLLKQF 420
  421 DDMQRMMKKM KKGGMAKMMR SMKGMMPPGF PGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits