YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220942810, gi...
Organism:	synthetic construct
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942810, gi....

Description	E-value	Query Range	Subject Range
gi\|60654283 - gi\|60654283\|gb\|AAX29834.1\| ribosomal protein L11 [synthetic construct]	258.0	[0..13]	[183..7]
gi\|187609302 - gi\|187609302\|pdb\|2ZKR\|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... tr\|G1TUB8\|G1TUB8... - Uncharacterized protein OS=Oryctolagus cuniculus GN=RPL11 PE=1 SV=2 gi\|208967312 - gi\|208967312\|dbj\|BAG73670.1\| ribosomal protein L11 [synthetic construct] RL11_CHILA - 60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3 RL11_BOVIN - 60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3 gi\|149695161 - gi\|149695161\|ref\|XP_001504267.1\| PREDICTED: similar to 60S ribosomal protein L11 [Equus caballus] RL11_RAT - 60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2 gi\|57678 - gi\|57678\|emb\|CAA44072.1\| ribosomal protein L11 [Rattus rattus] gi\|51980366 - gb\|AAH82185.1\| Unknown (protein for MGC:98663) [Xenopus laevis] RPL11 - ribosomal protein L11 RL11_MOUSE - 60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4	258.0	[0..13]	[183..8]
gi\|14719845, gi\|... - gi\|17512001\|gb\|AAH18970.1\| Ribosomal protein L11 [Homo sapiens], gi\|14719845\|gb\|AAD20460.3\| ribosoma... gi\|157929150, gi... - gi\|157929150\|gb\|ABW03860.1\| ribosomal protein L11 [synthetic construct], gi\|124000405\|gb\|ABM87711.1\|...	258.0	[0..13]	[183..7]
RL11_PONAB - 60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3 RL11_PONPY - 60S ribosomal protein L11 - Pongo pygmaeus (Orangutan)	257.0	[0..13]	[183..8]
gi\|112984334, gi... - gi\|54609213\|gb\|AAV34822.1\| ribosomal protein L11 [Bombyx mori], gi\|112984334\|ref\|NP_001037215.1\| rib...	255.0	[0..11]	[183..21]
gi\|60417168 - gi\|60417168\|emb\|CAH57695.1\| 60S ribosomal protein L11 [Platichthys flesus]	255.0	[0..11]	[183..6]
gi\|47209129 - gi\|47209129\|emb\|CAF89662.1\| unnamed protein product [Tetraodon nigroviridis]	255.0	[0..11]	[183..6]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVTKKIKR DPAKNPMRDL HIRKLCLNIC VGESGDRLTR AAKVLEQLTG QQPVFSKARY  60
   61 TVRSFGIRRN EKIAVHCTVR GAKAEEILER GLKVREYELR RENFSSTGNF GFGIQEHIDL 120
  121 GIKYDPSIGI YGLDFYVVLG RPGYNVNHRK RKSGTVGFQH RLTKEDAMKW FQQKYDGIIL 180
  181 NTKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	1s1iJ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits