YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168272910
Organism:	synthetic construct
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168272910.

Description	E-value	Query Range	Subject Range
gi\|48145903 - gi\|48145903\|emb\|CAG33174.1\| MAD2L1BP [Homo sapiens]	0.0	[1..274]	[1..274]
gi\|114607564 - gi\|114607564\|ref\|XP_518498.2\| PREDICTED: MAD2L1 binding protein isoform 2 [Pan troglodytes]	0.0	[1..274]	[1..274]
gi\|12832315, gi\|... - gi\|13385110\|ref\|NP_079925.1\| MAD2L1 binding protein [Mus musculus], gi\|12832315\|dbj\|BAB22054.1\| unna...	0.0	[9..274]	[12..276]
gi\|149069355, gi... - gi\|57528331\|ref\|NP_001009699.1\| MAD2L1 binding protein [Rattus norvegicus], gi\|56971334\|gb\|AAH88268....	0.0	[9..274]	[12..277]
gi\|109071293 - gi\|109071293\|ref\|XP_001096335.1\| PREDICTED: MAD2L1 binding protein [Macaca mulatta]	0.0	[1..274]	[1..274]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPEAEVLS SAAVPDLEWY EKSEETHASQ IELLETSSTQ EPLNASEAFC PRDCMVPVVF  60
   61 PGPVSQEGCC QFTCELLKHI MYQRQQLPLP YEQLKHFYRK PSPQAEEMLK KKPRATTEVS 120
  121 SRKCQQALAE LESVLSHLED FFARTLVPRV LILLGGNALS PKEFYELDLS LLAPYSVDQS 180
  181 LSTAACLRRL FRAIFMADAF SELQAPPLMG TVVMAQGHRN CGEDWFRPKL NYRVPSRGHK 240
  241 LTVTLSCGRP SIRTTAWEDY IWFQAPVTFK GFRE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits