YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944854, gi...
Organism:	synthetic construct
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944854, gi....

Description	E-value	Query Range	Subject Range
gi\|109139180 - gi\|109139180\|ref\|XP_001119129.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta]	234.0	[0..1]	[150..1]
gi\|61369380 - gi\|61369380\|gb\|AAX43326.1\| ribosomal protein S13 [synthetic construct]	233.0	[0..1]	[151..1]
RS13_CHICK - 40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3 CCDS7823.1_1 - null gi\|51980681 - gb\|AAH82187.1\| Unknown (protein for MGC:98670) [Xenopus laevis] gi\|55635357 - gi\|55635357\|ref\|XP_508306.1\| PREDICTED: hypothetical protein [Pan troglodytes] ENSCJAT00000018561 - null gi\|109107163 - gi\|109107163\|ref\|XP_001086088.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta] RS13_MOUSE - 40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2 gi\|197127940, gi... - gi\|197127940\|gb\|ACH44438.1\| putative ribosomal protein S13 variant 1 [Taeniopygia guttata], gi\|19712... RPS13 - ribosomal protein S13 RS13_BOVIN - 40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3 gi\|73988614, gi\|... - gi\|73988614\|ref\|XP_864902.1\| PREDICTED: similar to ribosomal protein S13 isoform 2 [Canis familiaris... gi\|123995225, gi... - gi\|61359234\|gb\|AAX41687.1\| ribosomal protein S13 [synthetic construct], gi\|123995225\|gb\|ABM85214.1\| ... gi\|542155715\|ref... - PREDICTED: 40S ribosomal protein S13 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p... ENSOCUP000000048... - pep:novel scaffold:oryCun2:GL018733:1083722:1086211:-1 gene:ENSOCUG00000005536 transcript:ENSOCUT000... tr\|M3W3Y8\|M3W3Y8... - Ribosomal protein S13 OS=Felis catus GN=RPS13 PE=3 SV=1 RS13_RAT - 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2 gi\|149719481 - gi\|149719481\|ref\|XP_001504999.1\| PREDICTED: similar to ribosomal protein S13 [Equus caballus] gi\|57730 - gi\|57730\|emb\|CAA37458.1\| unnamed protein product [Rattus rattus]	233.0	[0..1]	[151..1]
gi\|38101780, gi\|... - gi\|39975009\|ref\|XP_368895.1\| 40S ribosomal protein S13 [Magnaporthe grisea 70-15], gb\|EAA48691.1\| hy...	233.0	[0..1]	[151..1]
gi\|210104597, gi... - gi\|219460218\|ref\|XP_002227825.1\| hypothetical protein BRAFLDRAFT_115249 [Branchiostoma floridae], gi... gi\|24266981 - gi\|24266981\|gb\|AAN52387.1\| ribosomal protein S13 [Branchiostoma belcheri]	233.0	[0..1]	[151..1]
gi\|54609309, gi\|... - gi\|54609309\|gb\|AAV34870.1\| ribosomal protein S13 [Bombyx mori], gi\|148298648\|ref\|NP_001091754.1\| rib...	233.0	[0..1]	[151..1]
RS13_XENLA - 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2 gi\|89269947, gi\|... - gi\|89269947\|emb\|CAJ81269.1\| ribosomal protein S13 [Xenopus tropicalis], gi\|62860010\|ref\|NP_001016602...	232.0	[0..1]	[151..1]
RS13_SPOFR - 40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3	232.0	[0..1]	[151..1]
RS13_CRIGR - 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3	232.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHAPGKG ISQSALPYRR TVPSWLKLNA DDVKEQIKKL GKKGLTPSKI GIILRDSHGV  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.769551
Match:	PF08069.3
Description:	No description for PF08069.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [62-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVRFVNGNKI LRIMKSVGLK PDIPEDLYHM IKKAVAIRKH LERNRKDKDG KFRLILVESR  60
   61 IHRLARYYKT KSVLPPNWKY ESSTASALVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1yshE
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits