YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213421737
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E01-6750
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213421737.

Description	E-value	Query Range	Subject Range
gi\|68383161 - gi\|68383161\|ref\|XP_697851.1\| PREDICTED: similar to Valosin containing protein [Danio rerio]	3.0E-38	[3..242]	[14..269]
gi\|11095437 - gi\|11095437\|gb\|AAG29874.1\| valosin-containing protein [Homo sapiens]	6.0E-38	[3..242]	[31..286]
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	1.0E-37	[3..242]	[407..662]
gi\|73971222 - gi\|73971222\|ref\|XP_866137.1\| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER AT...	1.0E-37	[3..242]	[384..639]
gi\|90990971, gi\|... - gi\|90990971\|dbj\|BAE92937.1\| valosin containing protein [Gallus gallus], gi\|53126280\|emb\|CAG30944.1\| ... gi\|542166374\|ref... - PREDICTED: transitional endoplasmic reticulum ATPase [Zonotrichia albicollis]	2.0E-37	[3..242]	[403..658]
TERA_BOVIN - Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2 SV=1	2.0E-37	[3..242]	[403..658]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVGDLMQR LQKMMPAHIT PAFKTGEELL AWQKEQGEIR AAALARENRA MKMQRTFNRS  60
   61 GIRPLHQNCS FDNYRVECDG QMNALSKARQ YVDEFDGNIA SFVFSGKPGT GKNHLAAAIC 120
  121 NELLLRGKSV LIITVADIMS AMKDTFSNRE TSEEQLLNDL SNVDLLVIDE IGVQTESRYE 180
  181 KVIINQIVDR RSSSKRPTGM LTNSNMEEMT KMLGERVMDR MRLGNSLWVN FSWDSYRSRV 240
  241 TGKEY

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Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits