YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220944530, gi...
Organism:	synthetic construct
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944530, gi....

Description	E-value	Query Range	Subject Range
gi\|73968420 - gi\|73968420\|ref\|XP_531640.2\| PREDICTED: similar to nascent polypeptide-associated complex alpha poly...	274.0	[0..9]	[216..170]
gi\|1632784 - gi\|1632784\|emb\|CAA70166.1\| Nascent polypeptide associated complex protein alpha subunit [Drosophila ...	252.0	[0..1]	[217..1]
NACAM_MOUSE - Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca P...	249.0	[0..12]	[216..1981]
gi\|109480121 - gi\|109480121\|ref\|XP_213821.2\| PREDICTED: similar to Nascent polypeptide-associated complex alpha sub...	247.0	[0..12]	[216..1909]
gi\|125811363\|ref... - GA21300-PA [Drosophila pseudoobscura], GA21300 [Drosophila pseudoobscura pseudoobscura] gi\|195170352, gi... - gi\|195170352\|ref\|XP_002025977.1\| GL10112 [Drosophila persimilis], gi\|194110841\|gb\|EDW32884.1\| GL1011... gi\|125811363, gi... - gi\|54637031\|gb\|EAL26434.1\| GA21300 [Drosophila pseudoobscura pseudoobscura], gi\|125811363\|ref\|XP_001...	241.0	[0..1]	[217..1]
gi\|114644223 - gi\|114644223\|ref\|XP_509538.2\| PREDICTED: similar to alpha-NAC, muscle-specific form gp220 isoform 5 ...	240.0	[0..12]	[216..235]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELTEIKSE AAPSTSAEAK PEDVRVEDDG SDSDSDGGMP GLEEAVAATT QLGGGATGLP  60
   61 IDLVSKAKQS RGEKKARKIM LKLGLKQIQG VNRVTIRKSK NILFVINNPD VYKNPHSDTY 120
  121 IVFGEAKIED LSQQAQVAAA EKFKAPEAAG AADSVGATTS VAPIAEEDEE DVDDTGVDEK 180
  181 DIELVITQAN TTRAKAIKAL KNNNNDIVNA IMELTML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1tr8A
Description:	Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits