YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213163528
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	815 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213163528.

Description	E-value	Query Range	Subject Range
gi\|207858773, gi... - gi\|207858773\|ref\|YP_002245424.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|204322094, gi... - gi\|204928661\|ref\|ZP_03219860.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|199604662, gi... - gi\|200387564\|ref\|ZP_03214176.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonel... gi\|197936341, gi... - gi\|198241825\|ref\|YP_002217492.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|197364365, gi... - gi\|197364365\|ref\|YP_002144002.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|197266048, gi... - gi\|197266048\|ref\|ZP_03166122.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|197214800, gi... - gi\|197251097\|ref\|YP_002148457.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|194710025, gi... - gi\|194734523\|ref\|YP_002116468.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|194468936, gi... - gi\|194468936\|ref\|ZP_03074920.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar ... gi\|194404880, gi... - gi\|194446217\|ref\|YP_002042779.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|205344553, gi... - gi\|205344553\|gb\|EDZ31317.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Welt... gi\|195632191, gi... - gi\|195632191\|gb\|EDX50675.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Newp... gi\|205350199, gi... - gi\|205350199\|gb\|EDZ36830.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Hada... gi\|197291597, gi... - gi\|197291597\|gb\|EDY30949.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Schw... gi\|168232675, gi... - gi\|205333165\|gb\|EDZ19929.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonella e... gi\|205325751, gi... - gi\|205325751\|gb\|EDZ13590.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Sain... gi\|62182034, gi\|... - gi\|62182034\|ref\|YP_218451.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Cho... gi\|161365937, gi... - gi\|161616573\|ref\|YP_001590538.1\| hypothetical protein SPAB_04389 [Salmonella enterica subsp. enteric... gi\|56129692, gi\|... - gi\|56415435\|ref\|YP_152510.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar Par...	0.0	[1..815]	[1..815]
lcl\|NC_016856.1_... - [gene=glgP] [protein=glycogen phosphorylase] [protein_id=YP_005239739.1] [location=complement(371261... gi\|16422093, gi\|... - gi\|16766820\|ref\|NP_462435.1\| glycogen phosphorylase [Salmonella typhimurium LT2], gi\|16422093\|gb\|AAL... gi\|194409010, gi... - gi\|194450706\|ref\|YP_002047558.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar... gi\|167990742, gi... - gi\|205330828\|gb\|EDZ17592.1\| glycogen phosphorylase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168241679, gi... - gi\|205338770\|gb\|EDZ25534.1\| glycogen/starch/alpha-glucan phosphorylases family protein [Salmonella e...	0.0	[1..815]	[1..815]
gi\|74314031, gi\|... - gi\|74314031\|ref\|YP_312450.1\| glycogen phosphorylase [Shigella sonnei Ss046], gi\|73857508\|gb\|AAZ90215...	0.0	[1..815]	[1..815]
gi\|115514826, gi... - gi\|117625702\|ref\|YP_859025.1\| glycogen phosphorylase GlgP [Escherichia coli APEC O1], gi\|115514826\|g... gi\|227883571, gi... - gi\|227883571\|ref\|ZP_04001376.1\| glycogen phosphorylase [Escherichia coli 83972], gi\|227839450\|gb\|EEJ... gi\|218560493, gi... - gi\|218560493\|ref\|YP_002393406.1\| glycogen phosphorylase [Escherichia coli S88], gi\|218367262\|emb\|CAR... gi\|218691717, gi... - gi\|218691717\|ref\|YP_002399929.1\| glycogen phosphorylase [Escherichia coli ED1a], gi\|218429281\|emb\|CA... gi\|110643669, gi... - gi\|110643669\|ref\|YP_671399.1\| glycogen phosphorylase [Escherichia coli 536], gi\|110345261\|gb\|ABG7149... gi\|191171573, gi... - gi\|191171573\|ref\|ZP_03033121.1\| glycogen phosphorylase [Escherichia coli F11], gi\|190908200\|gb\|EDV67... gi\|91212911, gi\|... - gi\|91212911\|ref\|YP_542897.1\| glycogen phosphorylase [Escherichia coli UTI89], gi\|91074485\|gb\|ABE0936... gi\|215266781, gi... - gi\|215488709\|ref\|YP_002331140.1\| glycogen phosphorylase [Escherichia coli O127:H6 str. E2348/69], gi... gi\|237703168, gi... - gi\|237703168\|ref\|ZP_04533649.1\| glycogen phosphorylase GlgP [Escherichia sp. 3_2_53FAA], gi\|22690243... gi\|26110468, gi\|... - gi\|26250039\|ref\|NP_756079.1\| glycogen phosphorylase [Escherichia coli CFT073], gi\|26110468\|gb\|AAN826...	0.0	[1..815]	[1..815]
gi\|24114694, gi\|... - gi\|24114694\|ref\|NP_709204.1\| glycogen phosphorylase [Shigella flexneri 2a str. 301], gi\|24053905\|gb\|... gi\|30065288, gi\|... - gi\|30065288\|ref\|NP_839459.1\| glycogen phosphorylase [Shigella flexneri 2a str. 2457T], gi\|30043550\|g... PHSG_SHIFL - Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1 EG10380 - glycogen phosphorylase / Glycogen phosphorylase; alpha-glucan phosphorylase EG10380 - glycogen phosphorylase / Glycogen phosphorylase; alpha-glucan phosphorylase gi\|81242838, gi\|... - gi\|82778690\|ref\|YP_405039.1\| glycogen phosphorylase [Shigella dysenteriae Sd197], gi\|81242838\|gb\|ABB... gi\|81247205, gi\|... - gi\|82545794\|ref\|YP_409741.1\| glycogen phosphorylase [Shigella boydii Sb227], gi\|81247205\|gb\|ABB67913... gi\|85676614, gi\|... - gi\|89110583\|ref\|AP_004363.1\| glycogen phosphorylase [Escherichia coli str. K-12 substr. W3110], gi\|8... PHSG_ECOLI - Glycogen phosphorylase (EC 2.4.1.1) - Escherichia coli gi\|238861375, gi... - gi\|238902520\|ref\|YP_002928316.1\| glycogen phosphorylase [Escherichia coli BW2952], gi\|238861375\|gb\|A... gi\|251786679, gi... - gi\|251786679\|ref\|YP_003000983.1\| hypothetical protein B21_03233 [Escherichia coli BL21], gi\|24237895... gi\|254163355, gi... - gi\|254163355\|ref\|YP_003046463.1\| glycogen phosphorylase [Escherichia coli B str. REL606], gi\|2539752... gi\|254290105, gi... - gi\|254290105\|ref\|YP_003055853.1\| glycogen phosphorylase [Escherichia coli BL21(DE3)], gi\|253979412\|g... gi\|254038595, gi... - gi\|254038595\|ref\|ZP_04872651.1\| glycogen phosphorylase [Escherichia sp. 1_1_43], gi\|226839101\|gb\|EEH... gi\|110807264, gi... - gi\|110807264\|ref\|YP_690784.1\| glycogen phosphorylase [Shigella flexneri 5 str. 8401], gi\|110616812\|g... gi\|194425299, gi... - gi\|194435756\|ref\|ZP_03067859.1\| glycogen phosphorylase [Escherichia coli 101-1], gi\|194425299\|gb\|EDX... gi\|209914147, gi... - gi\|209920888\|ref\|YP_002294972.1\| glycogen phosphorylase [Escherichia coli SE11], gi\|209914147\|dbj\|BA... gi\|218555979, gi... - gi\|218555979\|ref\|YP_002388892.1\| glycogen phosphorylase [Escherichia coli IAI1], gi\|218362747\|emb\|CA... gi\|218353845, gi... - gi\|218697113\|ref\|YP_002404780.1\| glycogen phosphorylase [Escherichia coli 55989], gi\|218353845\|emb\|C... gi\|188492254, gi... - gi\|188492254\|ref\|ZP_02999524.1\| glycogen phosphorylase [Escherichia coli 53638], gi\|188487453\|gb\|EDU... gi\|190902660, gi... - gi\|191167308\|ref\|ZP_03029125.1\| glycogen phosphorylase [Escherichia coli B7A], gi\|190902660\|gb\|EDV62... gi\|193061881, gi... - gi\|193061881\|ref\|ZP_03042978.1\| glycogen phosphorylase [Escherichia coli E22], gi\|192932671\|gb\|EDV85... gi\|192957939, gi... - gi\|193068863\|ref\|ZP_03049823.1\| glycogen phosphorylase [Escherichia coli E110019], gi\|192957939\|gb\|E... gi\|170082943, gi... - gi\|170082943\|ref\|YP_001732263.1\| glycogen phosphorylase [Escherichia coli str. K-12 substr. DH10B], ... gi\|187428151, gi... - gi\|187731159\|ref\|YP_001882185.1\| glycogen phosphorylase [Shigella boydii CDC 3083-94], gi\|187428151\|... gi\|157068587, gi... - gi\|157162907\|ref\|YP_001460225.1\| glycogen phosphorylase [Escherichia coli HS], gi\|157068587\|gb\|ABV07... gi\|157157318, gi... - gi\|157157318\|ref\|YP_001464890.1\| glycogen phosphorylase [Escherichia coli E24377A], gi\|157079348\|gb\|...	0.0	[1..815]	[1..815]
gi\|606363\|gb\|AAA... - alpha-glucan phosphorylase [Escherichia coli] gi\|606363 - gi\|606363\|gb\|AAA58226.1\| alpha-glucan phosphorylase [Escherichia coli]	0.0	[1..815]	[1..815]
gi\|209160346, gi... - gi\|209398946\|ref\|YP_002272869.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208741057, gi... - gi\|208820934\|ref\|ZP_03261254.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|217321702, gi... - gi\|217325481\|ref\|ZP_03441565.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|195934920 - gi\|195934920\|ref\|ZP_03080302.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4024] gi\|189379876, gi... - gi\|189379876\|gb\|EDU98292.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC508], gi\|1687972... gi\|208735023, gi... - gi\|208813746\|ref\|ZP_03255075.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208727297, gi... - gi\|208807496\|ref\|ZP_03249833.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|168772673, gi... - gi\|187771555\|gb\|EDU35399.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4196], gi\|168772... gi\|254594747, gi... - gi\|254795347\|ref\|YP_003080184.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|189364812, gi... - gi\|189364812\|gb\|EDU83231.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4486], gi\|168765... gi\|168785239, gi... - gi\|189374449\|gb\|EDU92865.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC869], gi\|1687852... gi\|189002435, gi... - gi\|189002435\|gb\|EDU71421.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4076], gi\|168779... gi\|188018263, gi... - gi\|188018263\|gb\|EDU56385.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4113], gi\|168747... gi\|168759459, gi... - gi\|189369754\|gb\|EDU88170.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4501], gi\|168759... gi\|15833527, gi\|... - gi\|15833527\|ref\|NP_312300.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. Sakai], gi\|133637... gi\|189358872, gi... - gi\|189358872\|gb\|EDU77291.1\| glycogen phosphorylase [Escherichia coli O157:H7 str. EC4401], gi\|168753... gi\|15833527, gi\|... - gi\|15833527\|ref\|NP_312300.1\| glycogen phosphorylase [Escherichia coli O157:H7], gi\|13363747\|dbj\|BAB3... gi\|209756316, gi... - pir\|\|A98163 glycogen phosphorylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|15803937, gi\|... - gi\|15803937\|ref\|NP_289973.1\| glycogen phosphorylase [Escherichia coli O157:H7 EDL933], gi\|12518072\|g...	0.0	[1..815]	[1..815]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	0.0	[13..815]	[188..997]
gi\|22298324, gi\|... - gi\|22298324\|ref\|NP_681571.1\| glycogen phosphorylase [Thermosynechococcus elongatus BP-1], gi\|2229450...	0.0	[6..815]	[32..846]
gi\|147898991, gi... - gi\|47940264\|gb\|AAH72163.1\| MGC80198 protein [Xenopus laevis], gi\|147898991\|ref\|NP_001085064.1\| hypot...	0.0	[13..815]	[24..833]

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Predicted Domain #1

Region A:
Residues: [1-815]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPFTYASP TLSVEALKHS IAYKLMFTIG KDPVIANKHE WLNATLFAVR DRLVERWLRS  60
   61 NRAQLSQETR QVYYLSMEFL IGRTLSNALL SLGIYDDVKG ALEAMGLDLE ELIDEENDPG 120
  121 LGNGGLGRLA ACFLDSLATL GLPGRGYGIR YDYGMFKQNI VDGRQKESPD YWLEYGNPWE 180
  181 FKRHNTRYKV LFGGRIQQEG KKARWIETEE ILAVAYDQII PGYDTDATNT LRLWNAQASS 240
  241 EINLGKFNQG DYFAAVEDKN HSENVSRVLY PDDSTYSGRE LRLRQEYFLV SATVQDILHR 300
  301 HYQLHKTYEN LADKIAIHLN DTHPVLSIPE LMRLLIDEHK FSWDDAFEVC CQVFSYTNHT 360
  361 LMSEALETWP VDMLGKILPR HLQIIFEIND YFLKTLQEQY PNDTSLLGRA SIIDESNGRR 420
  421 VRMAWLAVVV SHKVNGVSEL HSNLMVQSLF ADFAKIFPTR FCNVTNGVTP RRWLALANPP 480
  481 LSDVLDENIG RTWRTDLSQL SELKQHCDYP LVNHAVRQAK LENKKRLAVV IAQQLNVVVN 540
  541 PKALFDVQIK RIHEYKRQLM NVLHVITRYN RIKENPEADW VPRVNIFAGK AASAYYMAKH 600
  601 IIHLINDVAK VINNDPQIGD KLKVVFIPNY SVSLAQVIIP AADLSEQISL AGTEASGTSN 660
  661 MKFALNGALT IGTLDGANVE MQEHVGEENI FIFGNTAEEV EALRRQGYKP RDYYEKDEEL 720
  721 HQVLTQIGNG VFNPEEPGRY RDLVDSLINF GDHYQVLADY RSYVDCQDKV DELYRRPEEW 780
  781 TTKAMLNIAN MGYFSSDRTI KEYAENIWHI DPVRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits