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View Structure Prediction Details

Protein: gi|214001939
Organism: Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length: 277 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214001939.

Description E-value Query
Range
Subject
Range
lcl|NC_016856.1_... - [gene=hemK] [protein=N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase] [protein_id=Y...
gi|206708521, gi... - gi|207856718|ref|YP_002243369.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [S...
gi|224583735, gi... - gi|224583735|ref|YP_002637533.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [S...
HEMK_SALTY - Protein methyltransferase hemK OS=Salmonella typhimurium GN=hemK PE=3 SV=2
gi|194443667, gi... - gi|194443667|ref|YP_002041025.1| protein-(glutamine-N5) methyltransferase, release factor-specific [...
gi|194735200, gi... - gi|194735200|ref|YP_002114805.1| protein-(glutamine-N5) methyltransferase, release factor-specific [...
gi|197243898, gi... - gi|197265643|ref|ZP_03165717.1| protein-(glutamine-N5) methyltransferase, release factor-specific [S...
gi|197939950, gi... - gi|198245434|ref|YP_002215370.1| protein methyltransferase HemK [Salmonella enterica subsp. enterica...
gi|161363093, gi... - gi|161613729|ref|YP_001587694.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [S...
gi|167993218, gi... - gi|205328672|gb|EDZ15436.1| protein methyltransferase HemK [Salmonella enterica subsp. enterica sero...
gi|197289229, gi... - gi|197289229|gb|EDY28596.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Salmo...
gi|205342641, gi... - gi|205342641|gb|EDZ29405.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Salmo...
PRMC_SALTY - Release factor glutamine methyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7...
PRMC_SALTY, HEMK... - Release factor glutamine methyltransferase OS=Salmonella typhimurium GN=prmC PE=3 SV=2, Protein meth...
gi|62127972, gi|... - gi|62180339|ref|YP_216756.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Salmo...
7.0E-56 [1..277] [1..277]
gi|197093706, gi... - gi|197362229|ref|YP_002141866.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [S...
gi|56413304, gi|... - gi|56413304|ref|YP_150379.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Salmo...
8.0E-56 [1..277] [1..277]
gi|49611644, gi|... - gi|50121118|ref|YP_050285.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Pecto...
2.0E-54 [1..275] [1..275]
gi|77973499 - gi|77973499|ref|ZP_00829046.1| COG2890: Methylase of polypeptide chain release factors [Yersinia fre...
2.0E-53 [1..276] [1..275]
gi|194423947, gi... - gi|83587356|ref|ZP_00925984.1| COG2890: Methylase of polypeptide chain release factors [Escherichia ...
gi|251784718, gi... - gi|251784718|ref|YP_002999022.1| hypothetical protein B21_01197 [Escherichia coli BL21], gi|24237699...
gi|253973195, gi... - gi|254161294|ref|YP_003044402.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [E...
gi|253977409, gi... - gi|254288102|ref|YP_003053850.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [E...
2.0E-53 [1..275] [1..275]
PRMC_SHIDS - Release factor glutamine methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=prmC...
2.0E-53 [1..275] [1..275]
gi|37525988, gi|... - gi|37525988|ref|NP_929332.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Photo...
4.0E-53 [1..275] [1..275]
gi|196113152, gi... - gi|88796062|ref|ZP_01111746.1| peptide release factor-glutamine N5-methyltransferase [Alteromonas ma...
4.0E-53 [1..275] [1..284]
gi|28805730 - gi|28805730|dbj|BAC59007.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28805730, gi|... - gi|28897518|ref|NP_797123.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633], gi|28805730|dbj|BA...
5.0E-53 [2..277] [6..284]
gi|26107936, gi|... - gi|26247535|ref|NP_753575.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Esche...
gi|117623430, gi... - gi|117623430|ref|YP_852343.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Esch...
gi|91072007, gi|... - gi|91210433|ref|YP_540419.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Esche...
gi|75242016, gi|... - gi|75242016|ref|ZP_00725810.1| COG2890: Methylase of polypeptide chain release factors [Escherichia ...
gi|110641442, gi... - gi|110641442|ref|YP_669172.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Esch...
gi|218426723, gi... - gi|218689159|ref|YP_002397371.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [E...
gi|218364910, gi... - gi|218558141|ref|YP_002391054.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [E...
gi|227836570, gi... - gi|227886366|ref|ZP_04004171.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Es...
gi|226899931, gi... - gi|237705174|ref|ZP_04535655.1| methyltransferase HemK [Escherichia sp. 3_2_53FAA], gi|226899931|gb|...
6.0E-53 [1..275] [1..275]

Back

Predicted Domain #1
Region A:
Residues: [1-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQHWLHEA VNQLRDSDSP RRDAEILLEY VTGKRRTYIM AFGETPLTDV QQQQLAELLQ  60
   61 RRKQGEPIAY LTGLREFWSL PLFVSPATLI PRPDTECLVE QALARLPVKT CRILDLGTGT 120
  121 GAIALALACE RPDCEVTAVD RMPDAVALAI RNAEHLAIRN VRILQSCWFS ALSGQQFDMI 180
  181 VSNPPYIDAQ DPHLSEGDVR FEPRSALVAD ENGMADLTHI IDNARQMLTP GGFLLLEHGW 240
  241 RQGEAVRAAF RRSGYTDVET CRDYGGNERV ACGRFTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.154902
Match: 1t43A
Description: Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-adenosylmethionine-dependent methyltransferase activity 4.81722723955895 bayes_pls_golite062009
methyltransferase activity 4.64500705012502 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.57389022626587 bayes_pls_golite062009
DNA-methyltransferase activity 3.31632172292823 bayes_pls_golite062009
N-methyltransferase activity 3.00112136063228 bayes_pls_golite062009
protein methyltransferase activity 2.74535979387581 bayes_pls_golite062009
transferase activity 2.42370637689376 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 2.17404404470337 bayes_pls_golite062009
catalytic activity 1.62377578202456 bayes_pls_golite062009
histone methyltransferase activity 1.42140847541194 bayes_pls_golite062009
arginine N-methyltransferase activity 1.40233857644962 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 1.40233857644962 bayes_pls_golite062009
RNA methyltransferase activity 1.36067005317038 bayes_pls_golite062009
rRNA methyltransferase activity 0.740099749645209 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 0.67380437956274 bayes_pls_golite062009
DNA (cytosine-5-)-methyltransferase activity 0.6110460718981 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 0.355464145533041 bayes_pls_golite062009
O-methyltransferase activity 0.32686871890222 bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity 0.255084448603261 bayes_pls_golite062009
binding 0.207713650201315 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 0.11336280953361 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle