YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189360376, gi...
Organism:	Escherichia coli O157:H7 str. EC4486
Length:	47 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189360376, gi....

Description	E-value	Query Range	Subject Range
gi\|29141515, gi\|... - gi\|29141515\|ref\|NP_804857.1\| hypothetical protein t1040 [Salmonella enterica subsp. enterica serovar... gi\|224468199, gi... - gi\|224583672\|ref\|YP_002637470.1\| hypothetical protein SPC_1891 [Salmonella enterica subsp. enterica ... gi\|16760727 - gi\|16760727\|ref\|NP_456344.1\| hypothetical protein STY1968 [Salmonella enterica subsp. enterica serov... gi\|207856656, gi... - gi\|207856656\|ref\|YP_002243307.1\| hypothetical protein SEN1199 [Salmonella enterica subsp. enterica s... gi\|25512734, gi\|... - gi\|25512734\|pir\|\|AF0727 conserved hypothetical protein STY1968 [imported] - Salmonella enterica subs... gi\|16765179, gi\|... - gi\|16765179\|ref\|NP_460794.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16420371\|... gi\|62128035, gi\|... - gi\|62180402\|ref\|YP_216819.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|238912098 - gi\|238912098\|ref\|ZP_04655935.1\| hypothetical protein SentesTe_13331 [Salmonella enterica subsp. ente... gi\|56127500, gi\|... - gi\|56413243\|ref\|YP_150318.1\| hypothetical protein SPA1035 [Salmonella enterica subsp. enterica serov... gi\|205352498, gi... - gi\|205352498\|ref\|YP_002226299.1\| hypothetical protein SG1280A [Salmonella enterica subsp. enterica s... gi\|197093646, gi... - gi\|197362169\|ref\|YP_002141806.1\| hypothetical protein SSPA0965 [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yobF] [protein=putative cytoplasmic protein] [protein_id=YP_005237780.1] [location=complement(...	71.0	[0..1]	[47..1]
gi\|165920016, gi... - gi\|165927959\|ref\|ZP_02223791.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|162351101, gi... - gi\|162418286\|ref\|YP_001606162.1\| hypothetical protein YpAngola_A1662 [Yersinia pestis Angola], gi\|16... gi\|167048456, gi... - gi\|167402181\|ref\|ZP_02307656.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|123442058, gi... - gi\|123442058\|ref\|YP_001006041.1\| hypothetical protein YE1764 [Yersinia enterocolitica subsp. enteroc... gi\|166211170, gi... - gi\|166211170\|ref\|ZP_02237205.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010963, gi... - gi\|166010963\|ref\|ZP_02231861.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149366302, gi... - gi\|149366302\|ref\|ZP_01888337.1\| hypothetical protein YPE_1517 [Yersinia pestis CA88-4125], gi\|149292... gi\|165938735, gi... - gi\|165938735\|ref\|ZP_02227290.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|186895058, gi... - gi\|186895058\|ref\|YP_001872170.1\| hypothetical protein YPTS_1746 [Yersinia pseudotuberculosis PB1/+],... gi\|170024700, gi... - gi\|170024700\|ref\|YP_001721205.1\| hypothetical protein YPK_2475 [Yersinia pseudotuberculosis YPIII], ... gi\|167427114, gi... - gi\|167427114\|ref\|ZP_02318867.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420423, gi... - gi\|167420423\|ref\|ZP_02312176.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... tr\|I3AGZ7\|I3AGZ7... - Uncharacterized protein OS=Serratia plymuthica A30 GN=B194_3060 PE=4 SV=1, Uncharacterized protein O... Q66BZ3\|Q66BZ3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis tr\|M3CUL6\|M3CUL6... - Uncharacterized protein OS=Serratia marcescens VGH107 GN=F518_00132 PE=4 SV=1 gi\|25510387 - pir\|\|AH0212 conserved hypothetical protein YPO1745 [imported] - Yersinia pestis (strain CO92) gi\|15979773, gi\|... - gi\|218928870\|ref\|YP_002346745.1\| hypothetical protein YPO1745 [Yersinia pestis CO92], gi\|16122002\|re... gi\|51589241, gi\|... - gi\|51595959\|ref\|YP_070150.1\| hypothetical protein YPTB1623 [Yersinia pseudotuberculosis IP 32953], g... gi\|229693457, gi... - gi\|229897120\|ref\|ZP_04512276.1\| hypothetical protein YPH_4136 [Yersinia pestis biovar Orientalis str... gi\|229703595, gi... - gi\|229894197\|ref\|ZP_04509380.1\| hypothetical protein YPS_1967 [Yersinia pestis Pestoides A], gi\|2297... gi\|238749592, gi... - gi\|238749592\|ref\|ZP_04611097.1\| hypothetical protein yrohd0001_29100 [Yersinia rohdei ATCC 43380], g... tr\|U2NA24\|U2NA24... - Uncharacterized protein OS=Serratia fonticola AU-P3(3) GN=L580_1679 PE=4 SV=1, Uncharacterized prote... gi\|229897847, gi... - gi\|229897847\|ref\|ZP_04512998.1\| hypothetical protein YPF_2259 [Yersinia pestis biovar Orientalis str... gi\|238758456, gi... - gi\|238758456\|ref\|ZP_04619633.1\| hypothetical protein yaldo0001_18560 [Yersinia aldovae ATCC 35236], ... gi\|238755631, gi... - gi\|238755631\|ref\|ZP_04616967.1\| hypothetical protein yruck0001_11830 [Yersinia ruckeri ATCC 29473], ... gi\|229680369, gi... - gi\|229902922\|ref\|ZP_04518039.1\| hypothetical protein YP516_2676 [Yersinia pestis Nepal516], gi\|22968... gi\|238722806, gi... - gi\|238789042\|ref\|ZP_04632831.1\| hypothetical protein yfred0001_41740 [Yersinia frederiksenii ATCC 33... gi\|108807115, gi... - gi\|108807115\|ref\|YP_651031.1\| hypothetical protein YPA_1119 [Yersinia pestis Antiqua], gi\|108779028\|... gi\|238713195, gi... - gi\|238785874\|ref\|ZP_04629841.1\| hypothetical protein yberc0001_18940 [Yersinia bercovieri ATCC 43970... gi\|238798060, gi... - gi\|238798060\|ref\|ZP_04641548.1\| hypothetical protein ymoll0001_17260 [Yersinia mollaretii ATCC 43969...	45.0	[0..1]	[26..1]

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Predicted Domain #1

Region A:
Residues: [1-47]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIFSKEVL SKHVDVEYRF SAEPYIGASC SNVSVLSMLC LRAKKTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits