YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194404283, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL254
Length:	305 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194404283, gi....

Description	E-value	Query Range	Subject Range
GPDA_LEPBL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	2.0E-46	[1..300]	[1..311]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	2.0E-46	[1..300]	[1..311]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	3.0E-46	[1..300]	[1..311]
gi\|16765893, gi\|... - gi\|16765893\|ref\|NP_461508.1\| 2-dehydropantoate 2-reductase [Salmonella typhimurium LT2], gi\|16421120... gi\|194408243, gi... - gi\|194449939\|ref\|YP_002046635.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_3153] [protein=2-dehydropantoate 2-reductase] [protein_id=YP_005238680.1] [location=comp... gi\|205337694, gi... - gi\|205337694\|gb\|EDZ24458.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica serov... gi\|205349332, gi... - gi\|205349332\|gb\|EDZ35963.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica serov... gi\|167549395, gi... - gi\|205325261\|gb\|EDZ13100.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica serov... gi\|205329159, gi... - gi\|205329159\|gb\|EDZ15923.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica serov...	4.0E-46	[1..305]	[1..305]
GPDA_LEPBJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	6.0E-46	[1..300]	[1..311]
GPDA_LACRJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus reuteri (strain JCM 1112) GN=gpsA PE=3... gi\|227530716, gi... - gi\|227530716\|ref\|ZP_03960765.1\| glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Lactobacillus reuter... gi\|184153015, gi... - gi\|89090998\|ref\|ZP_01164028.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Lactobacillus reuteri J... GPDA_LACRD - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus reuteri (strain DSM 20016) GN=gpsA PE=... gi\|227071530, gi... - gi\|227363430\|ref\|ZP_03847554.1\| glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Lactobacillus reuter...	7.0E-46	[2..303]	[4..319]
gi\|56126808, gi\|... - gi\|56412551\|ref\|YP_149626.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica sero...	8.0E-46	[1..305]	[1..305]
gi\|194453008, gi... - gi\|92088589\|ref\|ZP_01273550.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Lactobacillus reuteri 1...	8.0E-46	[2..303]	[4..319]
gi\|62128771, gi\|... - gi\|62181138\|ref\|YP_217555.1\| 2-dehydropantoate 2-reductase [Salmonella enterica subsp. enterica sero...	1.0E-45	[1..305]	[1..305]
GPDA_OCEIH - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Oceanobacillus iheyensis GN=gpsA PE=3 SV=1 GPDA_OCEIH - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 113...	2.0E-45	[2..299]	[3..309]

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Predicted Domain #1

Region A:
Residues: [1-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIAGAGA MGCRFGYMLL EAGHDVTLID GWQEHVDAIR SKGLFVETET TQKYYPIPAM  60
   61 LADESQGEFE LVILFTKAMQ LDSMLQRIKP LLPAAKVVMI LSNGLGNIET LEKYVDRQKI 120
  121 YAGVTLWSSE LEGAGHIMAT GTGTIELQPI ASQDSAQEAK VIATLNSAGL NAEISPDVLL 180
  181 SIWKKAAFNS VMNTYCALLD CNVGGFGQRP GALDLAQAVV DEFVLVAASQ NIPLTEQMVM 240
  241 NTVKKVFDPR ESGHHYPSMH QDLHKGRLTE IDYLNGAIAR IGAQNNIAVP VNTLLTQLIH 300
  301 AKEAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.045757
Match:	2ew2A
Description:	Crystal Structure of the Putative 2-Dehydropantoate 2-Reductase from Enterococcus faecalis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits