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View Structure Prediction Details

Protein: gi|213425945
Organism: Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425945.

Description E-value Query
Range
Subject
Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1
RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...
7.0E-71 [1..185] [1..185]
gi|24050375, gi|... - gi|24111607|ref|NP_706117.1| ribosome recycling factor [Shigella flexneri 2a str. 301], gi|24050375|...
gi|195938146 - gi|195938146|ref|ZP_03083528.1| ribosome recycling factor [Escherichia coli O157:H7 str. EC4024]
RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frr PE=3...
gi|208809164, gi... - gi|208809164|ref|ZP_03251501.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206], gi...
gi|30061729, gi|... - gi|30061729|ref|NP_835900.1| ribosome recycling factor [Shigella flexneri 2a str. 2457T], gi|3003997...
gi|208812775, gi... - gi|208812775|ref|ZP_03254104.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045], gi...
RRF_ECO57 - Ribosome-recycling factor OS=Escherichia coli O157:H7 GN=frr PE=3 SV=1
gi|208739249, gi... - gi|208819126|ref|ZP_03259446.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042], gi...
EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t...
RRF_ECO5E - Ribosome-recycling factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frr PE=3 SV=1
gi|15799854, gi|... - gi|15799854|ref|NP_285866.1| ribosome recycling factor [Escherichia coli O157:H7 EDL933], gi|1251289...
RRF_ECOSE - Ribosome-recycling factor OS=Escherichia coli (strain SE11) GN=frr PE=3 SV=1
RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1
gi|217321359, gi... - gi|217325138|ref|ZP_03441222.1| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588], g...
gi|189357057, gi... - gi|189357057|gb|EDU75476.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401], gi|168...
gi|189365640, gi... - gi|189365640|gb|EDU84056.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501], gi|168...
gi|189360728, gi... - gi|189360728|gb|EDU79147.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486], gi|168...
gi|168777009, gi... - gi|187767671|gb|EDU31515.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196], gi|168...
gi|189000476, gi... - gi|189000476|gb|EDU69462.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076], gi|168...
gi|168789281, gi... - gi|189371119|gb|EDU89535.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC869], gi|1687...
RRF_ECODH - Ribosome-recycling factor OS=Escherichia coli (strain K12 / DH10B) GN=frr PE=3 SV=1
RRF_ECOSM - Ribosome-recycling factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frr PE=3 SV=1
RRF_ESCF3 - Ribosome-recycling factor OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN...
RRF_ECO8A - Ribosome-recycling factor OS=Escherichia coli O8 (strain IAI1) GN=frr PE=3 SV=1
RRF_ECO45 - Ribosome-recycling factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frr PE=3 SV=1
RRF_ECO81 - Ribosome-recycling factor OS=Escherichia coli O81 (strain ED1a) GN=frr PE=3 SV=1
RRF_ECO55 - Ribosome-recycling factor OS=Escherichia coli (strain 55989 / EAEC) GN=frr PE=3 SV=1
RRF_ECO7I - Ribosome-recycling factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frr PE=3 SV=1
RRF_ECOLC - Ribosome-recycling factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frr PE=3 SV=...
RRF_ECOLU - Ribosome-recycling factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=frr PE=3 SV=1
RRF_SHIFL - Ribosome-recycling factor OS=Shigella flexneri GN=frr PE=3 SV=1
EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t...
RRF_ECOLI - Ribosome recycling factor (Ribosome-releasing factor) (RRF) - Escherichia coli
gi|75258839, gi|... - gi|75258839|ref|ZP_00730229.1| COG0233: Ribosome recycling factor [Escherichia coli E22], gi|1930632...
gi|190906953, gi... - gi|75240239|ref|ZP_00724186.1| COG0233: Ribosome recycling factor [Escherichia coli F11], gi|1911728...
gi|75238875, gi|... - gi|75238875|ref|ZP_00722857.1| COG0233: Ribosome recycling factor [Escherichia coli E110019], gi|193...
gi|75230467, gi|... - gi|75230467|ref|ZP_00716948.1| COG0233: Ribosome recycling factor [Escherichia coli B7A], gi|1911663...
RRF_SHIBS - Ribosome-recycling factor OS=Shigella boydii serotype 4 (strain Sb227) GN=frr PE=3 SV=1
RRF_SHIDS - Ribosome-recycling factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frr PE=3 SV=1
sp|B7UIL7|RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1
RRF_SHISS - Ribosome-recycling factor OS=Shigella sonnei (strain Ss046) GN=frr PE=3 SV=1
gi|75512184, gi|... - gi|75512184|ref|ZP_00734756.1| COG0233: Ribosome recycling factor [Escherichia coli 53638], gi|18849...
gi|83585488, gi|... - gi|83585488|ref|ZP_00924133.1| COG0233: Ribosome recycling factor [Escherichia coli 101-1], gi|19443...
gi|194433418, gi... - gi|83569754|ref|ZP_00921204.1| COG0233: Ribosome recycling factor [Shigella dysenteriae 1012], gi|19...
gi|194428316, gi... - gi|75210495|ref|ZP_00710646.1| COG0233: Ribosome recycling factor [Escherichia coli B171], gi|194428...
RRF_ECOHS - Ribosome-recycling factor OS=Escherichia coli O9:H4 (strain HS) GN=frr PE=3 SV=1
RRF_ECO24 - Ribosome-recycling factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frr PE=3 SV=1
RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6 GN=frr PE=3 SV=1
RRF_SHIB3 - Ribosome-recycling factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frr PE=3 SV...
gi|188014582, gi... - gi|188014582|gb|EDU52704.1| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113], gi|168...
gi|254590705, gi... - gi|254791305|ref|YP_003076142.1| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359], ...
gi|254160291, gi... - gi|254160291|ref|YP_003043399.1| ribosome releasing factor [Escherichia coli B str. REL606], gi|2539...
gi|226840697, gi... - gi|254037591|ref|ZP_04871668.1| ribosome-recycling factor [Escherichia sp. 1_1_43], gi|226840697|gb|...
gi|253774801, gi... - gi|254287094|ref|YP_003052842.1| ribosome releasing factor [Escherichia coli BL21(DE3)], gi|25397640...
gi|242376003, gi... - gi|251783730|ref|YP_002998034.1| hypothetical protein B21_00169 [Escherichia coli BL21], gi|24237600...
RRF_ECOBW - Ribosome-recycling factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=frr PE=3 SV=1
gi|226902243, gi... - gi|237704331|ref|ZP_04534812.1| ribosome-recycling factor [Escherichia sp. 3_2_53FAA], gi|226902243|...
gi|227884915, gi... - gi|227884915|ref|ZP_04002720.1| ribosome recycling factor [Escherichia coli 83972], gi|227838053|gb|...
gi|21239027, gi|... - gi|89107052|ref|AP_000832.1| ribosome recycling factor [Escherichia coli str. K-12 substr. W3110], g...
gi|124529604, gi... - gi|124529604|ref|ZP_01700548.1| ribosome recycling factor [Escherichia coli B], gi|124499760|gb|EAY4...
RRF_ECOUT - Ribosome-recycling factor OS=Escherichia coli (strain UTI89 / UPEC) GN=frr PE=3 SV=1
gi|13359630, gi|... - gi|15829428|ref|NP_308201.1| ribosome recycling factor [Escherichia coli O157:H7 str. Sakai], gi|133...
RRF_ECOL5 - Ribosome-recycling factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frr PE=3 SV=1
RRF_SHIF8 - Ribosome-recycling factor OS=Shigella flexneri serotype 5b (strain 8401) GN=frr PE=3 SV=1
4.0E-70 [1..185] [1..185]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...
3.0E-69 [1..185] [1..185]
gi|37926485 - gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Esch...
3.0E-69 [1..185] [1..185]
RRF_YERPG - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1
RRF_YERP3 - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3...
gi|45442572, gi|... - gi|45442572|ref|NP_994111.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001],...
gi|22127009, gi|... - gi|22127009|ref|NP_670432.1| ribosome recycling factor [Yersinia pestis KIM], gi|21960056|gb|AAM8668...
gi|15979114, gi|... - gi|218928215|ref|YP_002346090.1| ribosome recycling factor [Yersinia pestis CO92], gi|16121347|ref|N...
gi|229843077, gi... - gi|229843077|ref|ZP_04463227.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. In...
RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=frr PE=3 SV=...
gi|229840976, gi... - gi|229840976|ref|ZP_04461135.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PE...
gi|229837754, gi... - gi|229837754|ref|ZP_04457914.1| ribosome recycling factor [Yersinia pestis Pestoides A], gi|22970413...
gi|89105137, gi|... - gi|89105137|ref|ZP_01177662.1| COG0233: Ribosome recycling factor [Yersinia pestis biovar Orientalis...
RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1
RRF_YERPA - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1
RRF_YERPN - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1
gi|166011931, gi... - gi|166011931|ref|ZP_02232829.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979...
gi|166211643, gi... - gi|166211643|ref|ZP_02237678.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B4200...
gi|167399872, gi... - gi|167399872|ref|ZP_02305390.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-...
gi|167419665, gi... - gi|167419665|ref|ZP_02311418.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG...
RRF_YERPP - Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1
gi|167055636, gi... - gi|167425236|ref|ZP_02316989.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K...
RRF_YERPE - Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1
gi|149366952, gi... - gi|149366952|ref|ZP_01888985.1| ribosome recycling factor [Yersinia pestis CA88-4125], gi|149290566|...
gi|167470429 - gi|167470429|ref|ZP_02335133.1| ribosome recycling factor [Yersinia pestis FV-1]
RRF_YERPY - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=...
RRF_YERPB - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1
gi|165920967, gi... - gi|165927071|ref|ZP_02222903.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1...
5.0E-69 [1..185] [1..185]
RRF_SALPK - Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1
RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frr PE=3 SV=1
RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1
1.0E-68 [1..185] [1..185]
RRF_HISS2 - Ribosome-recycling factor OS=Histophilus somni (strain 2336) GN=frr PE=3 SV=1
RRF_HAES1 - Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1
1.0E-68 [1..185] [1..185]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1
RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1
RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...
1.0E-68 [1..184] [1..184]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1
1.0E-68 [1..184] [1..184]
RRF_PASMU - Ribosome-recycling factor OS=Pasteurella multocida GN=frr PE=3 SV=1
RRF_PASMU - Ribosome-recycling factor OS=Pasteurella multocida (strain Pm70) GN=frr PE=3 SV=1
2.0E-68 [1..185] [1..185]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDIRKDAE VRMEKCVEAF KTQISKVRTG RASPSLLDGI VVEYYGTPTP LRQLASVTVE  60
   61 DSRTLKINVF DRSMGPAVEK AIMASDLGLN PSSAGTDIRV PLPPLTEERR KDLTKIVRGE 120
  121 AEQARVAVRN VRRDANDKVK ALLKDKAISE DDDRRSQEEV QKMTDAAIKK VDAALADKEA 180
  181 ELMQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 1ek8A
Description: Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation regulator activity 4.3587179630028 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.16037247039451 bayes_pls_golite062009
nucleic acid binding 3.79085926340206 bayes_pls_golite062009
binding 2.89152455528061 bayes_pls_golite062009
translation termination factor activity 2.10810503428749 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle