YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194444194, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL254
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194444194, gi....

Description	E-value	Query Range	Subject Range
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	0.0	[1..462]	[1..462]
gi\|188015255, gi... - gi\|188015255\|gb\|EDU53377.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|189355541, gi... - gi\|189355541\|gb\|EDU73960.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168763698, gi... - gi\|189366180\|gb\|EDU84596.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168771141, gi... - gi\|189360031\|gb\|EDU78450.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|187768709, gi... - gi\|187768709\|gb\|EDU32553.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168783422, gi... - gi\|188999230\|gb\|EDU68216.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168789436, gi... - gi\|189370972\|gb\|EDU89388.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC8... gi\|209912173, gi... - gi\|209918914\|ref\|YP_002292998.1\| pyridine nucleotide transhydrogenase [Escherichia coli SE11], gi\|20... gi\|217318050, gi... - gi\|217328703\|ref\|ZP_03444784.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|218360937, gi... - gi\|218554169\|ref\|YP_002387082.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI1], gi\|21... gi\|218558472, gi... - gi\|218558472\|ref\|YP_002391385.1\| pyridine nucleotide transhydrogenase [Escherichia coli S88], gi\|218... gi\|218351896, gi... - gi\|218695164\|ref\|YP_002402831.1\| pyridine nucleotide transhydrogenase [Escherichia coli 55989], gi\|2... gi\|218369818, gi... - gi\|218699832\|ref\|YP_002407461.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI39], gi\|2... gi\|218705102, gi... - gi\|218705102\|ref\|YP_002412621.1\| pyridine nucleotide transhydrogenase [Escherichia coli UMN026], gi\|... gi\|168800859, gi... - gi\|189376895\|gb\|EDU95311.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC5... gi\|169754973, gi... - gi\|170020045\|ref\|YP_001724999.1\| pyridine nucleotide transhydrogenase [Escherichia coli ATCC 8739], ... gi\|169889101, gi... - gi\|170081266\|ref\|YP_001730586.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|195938992 - gi\|195938992\|ref\|ZP_03084374.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. ... gi\|208725163, gi... - gi\|208810647\|ref\|ZP_03252523.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208816653, gi... - gi\|208816653\|ref\|ZP_03257773.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208819628, gi... - gi\|208819628\|ref\|ZP_03259948.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|209158336, gi... - gi\|209396936\|ref\|YP_002270674.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... PNTB_SHIFL - NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1 gi\|24112989, gi\|... - gi\|24112989\|ref\|NP_707499.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 301], g... PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|30041365, gi\|... - gi\|30063116\|ref\|NP_837287.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 2457T],... PNTB_ECOLI - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta... PNTB_ECO57 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1 PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1 gi\|254592619, gi... - gi\|254793219\|ref\|YP_003078056.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|253973564, gi... - gi\|254161663\|ref\|YP_003044771.1\| pyridine nucleotide transhydrogenase [Escherichia coli B str. REL60... gi\|13361775, gi\|... - gi\|15831562\|ref\|NP_310335.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. Sak... gi\|253977759, gi... - gi\|254288452\|ref\|YP_003054200.1\| pyridine nucleotide transhydrogenase [Escherichia coli BL21(DE3)], ... gi\|110615123, gi... - gi\|110805575\|ref\|YP_689095.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 5 str. 8401], ... gi\|251785060, gi... - gi\|251785060\|ref\|YP_002999364.1\| hypothetical protein B21_01561 [Escherichia coli BL21], gi\|24237733... gi\|238900818, gi... - gi\|238900818\|ref\|YP_002926614.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|237705542, gi... - gi\|237705542\|ref\|ZP_04536023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886040, gi... - gi\|227886040\|ref\|ZP_04003845.1\| pyridine nucleotide transhydrogenase [Escherichia coli 83972], gi\|22... gi\|1742636, gi\|8... - gi\|89108443\|ref\|AP_002223.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli st... gi\|91210813, gi\|... - gi\|91210813\|ref\|YP_540799.1\| pyridine nucleotide transhydrogenase [Escherichia coli UTI89], gi\|91072... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... gi\|15802016, gi\|... - gi\|15802016\|ref\|NP_288037.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 EDL933],... gi\|117623788, gi... - gi\|117623788\|ref\|YP_852701.1\| pyridine nucleotide transhydrogenase [Escherichia coli APEC O1], gi\|11... gi\|124529243, gi... - gi\|124529243\|ref\|ZP_01700318.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli B], gi\|12450... gi\|82776829, gi\|... - gi\|82776829\|ref\|YP_403178.1\| pyridine nucleotide transhydrogenase [Shigella dysenteriae Sd197], gi\|8... gi\|75512965, gi\|... - gi\|75512965\|ref\|ZP_00735446.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 536... gi\|74312073, gi\|... - gi\|74312073\|ref\|YP_310492.1\| pyridine nucleotide transhydrogenase [Shigella sonnei Ss046], gi\|738555... gi\|194436470, gi... - gi\|83587937\|ref\|ZP_00926563.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 101... gi\|187731810, gi... - gi\|75178503\|ref\|ZP_00698549.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella boydii BS51... gi\|194419839, gi... - gi\|83570992\|ref\|ZP_00922434.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella dysenteriae... gi\|75212939, gi\|... - gi\|75212939\|ref\|ZP_00712937.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B17... gi\|192927426, gi... - gi\|75257021\|ref\|ZP_00728581.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E22... gi\|157155678, gi... - gi\|75190642\|ref\|ZP_00703909.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E24... gi\|75195682, gi\|... - gi\|75195682\|ref\|ZP_00705752.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli HS]...	0.0	[1..462]	[1..462]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	0.0	[1..462]	[1..462]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	0.0	[1..462]	[1..462]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	0.0	[1..462]	[1..462]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	0.0	[1..462]	[1..462]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	0.0	[1..462]	[1..462]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	0.0	[1..462]	[1..462]
gi\|162418619, gi... - gi\|77636206\|ref\|ZP_00798282.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis Ango... gi\|25284883 - pir\|\|AG0280 NAD(P) transhydrogenase (AB-specific) (EC 1.6.1.2) - Yersinia pestis (strain CO92) gi\|45436745, gi\|... - gi\|45441882\|ref\|NP_993421.1\| pyridine nucleotide transhydrogenase [Yersinia pestis biovar Microtus s... gi\|22126022, gi\|... - gi\|22126022\|ref\|NP_669445.1\| pyridine nucleotide transhydrogenase [Yersinia pestis KIM], gi\|21958971... gi\|218929394, gi... - gi\|218929394\|ref\|YP_002347269.1\| pyridine nucleotide transhydrogenase [Yersinia pestis CO92], gi\|161... gi\|51596548, gi\|... - gi\|51596548\|ref\|YP_070739.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis IP 32... gi\|229688671, gi... - gi\|229898381\|ref\|ZP_04513528.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229894980, gi... - gi\|229894980\|ref\|ZP_04510158.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229837820, gi... - gi\|229837820\|ref\|ZP_04457979.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|152958614, gi... - gi\|77629298\|ref\|ZP_00791884.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pseudotuber... gi\|149292198, gi... - gi\|149365785\|ref\|ZP_01887820.1\| NAD(P) transhydrogenase subunit beta [Yersinia pestis CA88-4125], gi... gi\|145209839, gi... - gi\|145598143\|ref\|YP_001162219.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Pestoides F],... Q66AA8\|Q66AA8_YERPS - NAD(P) transhydrogenase subunit beta precursor - Yersinia pseudotuberculosis gi\|89104625, gi\|... - gi\|89104625\|ref\|ZP_01177163.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis biov... gi\|108779559, gi... - gi\|108807646\|ref\|YP_651562.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Antiqua], gi\|108... gi\|165920845, gi... - gi\|165927177\|ref\|ZP_02223009.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|108811925, gi... - gi\|229902228\|ref\|ZP_04517349.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|165990317, gi... - gi\|166010615\|ref\|ZP_02231513.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166210796, gi... - gi\|166210796\|ref\|ZP_02236831.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|167400947, gi... - gi\|167400947\|ref\|ZP_02306453.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166958926, gi... - gi\|167422114\|ref\|ZP_02313867.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|167056020, gi... - gi\|167424833\|ref\|ZP_02316586.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Mediae... gi\|167469358 - gi\|167469358\|ref\|ZP_02334062.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis FV-1] gi\|169750713, gi... - gi\|170024179\|ref\|YP_001720684.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis Y... gi\|186895608, gi... - gi\|186895608\|ref\|YP_001872720.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis P...	0.0	[1..462]	[1..462]
gi\|15602617, gi\|... - gi\|15602617\|ref\|NP_245689.1\| pyridine nucleotide transhydrogenase [Pasteurella multocida subsp. mult...	0.0	[1..462]	[1..474]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLVTAAY IVAAILFIFS LAGLSKHETS RQGNNFGIAG MAIALLATIF GPDTGNVAWI  60
   61 LVAMIIGGAI GIRMAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLYHD ASLAPVLVNI 120
  121 HLTEVFLGIF IGAVTFTGSI VAFGKLRGKI SSKPLMLPNR HKMNLAALVV SFLLLLVFVR 180
  181 TESVGLQVLA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLMTIIALAF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFGTDGSS TGDDQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [288-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGEHREITAE ETAEMLKNSH SVIITPGYGM AVAQAQYPVA EITEKLRARG INVRFGIHPV  60
   61 AGRLPGHMNV LLAEAKVPYD IVLEMDEIND DFADTDTVLV IGANDTVNPA AQDDPRSPIA 120
  121 GMPVLEVWKA QNVVVFKRSM NTGYAGVQNP LFFKENTQML FGDAKASVDA ILKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.154902
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits