YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218370121, gi...
Organism:	Escherichia coli IAI39
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218370121, gi....

Description	E-value	Query Range	Subject Range
YI2A_ECOLX - Insertion element IS2A uncharacterized 48.2 kDa protein OS=Escherichia coli PE=3 SV=2 YI2A_ECOLI - Insertion element IS2A uncharacterized 48.2 kDa protein - Escherichia coli (strain K12)	135.0	[0..1]	[130..1]
gi\|82777792, gi\|... - gi\|82777959\|ref\|YP_404308.1\| insertion sequence 2 OrfA protein [Shigella dysenteriae Sd197], gi\|8277... gi\|110614884, gi... - gi\|110806275\|ref\|YP_689795.1\| insertion sequence 2 OrfA protein [Shigella flexneri 5 str. 8401], gi\|... gi\|18462629, gi\|... - gi\|31983637\|ref\|NP_858239.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 301], gb\|A... gi\|24112247, gi\|... - gi\|31983637\|ref\|NP_858239.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 301], gi\|2... gi\|30063666, gi\|... - gi\|30063666\|ref\|NP_837837.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 2457T], gi...	133.0	[0..1]	[136..1]
gi\|30042211, gi\|... - gi\|30063955\|ref\|NP_838126.1\| insertion sequence 2 OrfA protein [Shigella flexneri 2a str. 2457T], gi...	132.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLILVFRL VIGEQMIDVL GPEKRRRRTT QEKIAIVQQS FEPGMTVSLV ARQHGVAASQ  60
   61 LFLWRKQYQE GSLTAVAAGE QVVPASELAA AMKQIKELQR LLGKKTMENE LLKEAVEYGR 120
  121 AKKWIAHAPL LPGDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2jn6A
Description:	No description for 2jn6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits