YRC Public Data Repository - Protein Structure Prediction

Protein:	FUCM_SALPK
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUCM_SALPK.

Description	E-value	Query Range	Subject Range
gi\|167993476, gi... - gi\|205328448\|gb\|EDZ15212.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|205349306, gi... - gi\|205349306\|gb\|EDZ35937.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=fucU] [protein=putative L-fucose-binding protein] [protein_id=YP_005239099.1] [location=315132... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fucU PE=3 SV=... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium GN=fucU PE=3 SV=1	1.0E-47	[1..140]	[1..140]
FUCM_SHIF8 - L-fucose mutarotase OS=Shigella flexneri serotype 5b (strain 8401) GN=fucU PE=3 SV=1 FUCM_ECOUT - L-fucose mutarotase OS=Escherichia coli (strain UTI89 / UPEC) GN=fucU PE=3 SV=1 gi\|15832918, gi\|... - gi\|15832918\|ref\|NP_311691.1\| FucU [Escherichia coli O157:H7 str. Sakai], gi\|13363136\|dbj\|BAB37087.1\|... FUCM_ECOL5 - L-fucose mutarotase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fucU PE=3 SV=1 FUCM_ECOK1 - L-fucose mutarotase OS=Escherichia coli O1:K1 / APEC GN=fucU PE=3 SV=1 gi\|124528769, gi... - gi\|124528769\|ref\|ZP_01699993.1\| RbsD or FucU transport [Escherichia coli B], gi\|124500297\|gb\|EAY4777... FUCU_ECOLI - Fucose operon fucU protein - Escherichia coli gi\|227834615, gi... - gi\|227888346\|ref\|ZP_04006151.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... FUCM_ECOSM - L-fucose mutarotase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fucU PE=3 SV=1 FUCM_ECOLU - L-fucose mutarotase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECOLC - L-fucose mutarotase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fucU PE=3 SV=1 FUCM_ECODH - L-fucose mutarotase OS=Escherichia coli (strain K12 / DH10B) GN=fucU PE=3 SV=1 FUCM_ECO27 - L-fucose mutarotase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fucU PE=3 SV=1 FUCM_ECOSE - L-fucose mutarotase OS=Escherichia coli (strain SE11) GN=fucU PE=3 SV=1 FUCM_ECO8A - L-fucose mutarotase OS=Escherichia coli O8 (strain IAI1) GN=fucU PE=3 SV=1 gi\|217327079, gi... - gi\|217327079\|ref\|ZP_03443162.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. TW14588], ... FUCM_ECO81 - L-fucose mutarotase OS=Escherichia coli O81 (strain ED1a) GN=fucU PE=3 SV=1 FUCM_ECO45 - L-fucose mutarotase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECO7I - L-fucose mutarotase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECO55 - L-fucose mutarotase OS=Escherichia coli (strain 55989 / EAEC) GN=fucU PE=3 SV=1 FUCM_ECOL6, FUCU... - Fucose operon fucU protein - Escherichia coli O6, L-fucose mutarotase OS=Escherichia coli O6 GN=fucU... gi\|85675623, gi\|... - gi\|89109590\|ref\|AP_003370.1\| L-fucose mutarotase [Escherichia coli str. K-12 substr. W3110], gi\|8567... FUCM_SHIDS - L-fucose mutarotase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fucU PE=3 SV=1 FUCM_SHIBS - L-fucose mutarotase OS=Shigella boydii serotype 4 (strain Sb227) GN=fucU PE=3 SV=1 gi\|191168548, gi... - gi\|75228235\|ref\|ZP_00714892.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|189372224, gi... - gi\|189372224\|gb\|EDU90640.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|75233970, gi\|... - gi\|75233970\|ref\|ZP_00718419.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|189003242, gi... - gi\|189003242\|gb\|EDU72228.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4076], gi\|16... FUCM_ECOHS - L-fucose mutarotase OS=Escherichia coli O9:H4 (strain HS) GN=fucU PE=3 SV=1 gi\|195936408 - gi\|195936408\|ref\|ZP_03081790.1\| L-fucose mutarotase [Escherichia coli O157:H7 str. EC4024] gi\|194415757, gi... - gi\|75212576\|ref\|ZP_00712600.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|168801668, gi... - gi\|189376196\|gb\|EDU94612.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|75511947, gi\|... - gi\|75511947\|ref\|ZP_00734550.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|208814583, gi... - gi\|208814583\|ref\|ZP_03255912.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4045], g... FUCM_SHISS - L-fucose mutarotase OS=Shigella sonnei (strain Ss046) GN=fucU PE=3 SV=1 gi\|208807976, gi... - gi\|208807976\|ref\|ZP_03250313.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4206], g... gi\|190908447, gi... - gi\|75241806\|ref\|ZP_00725625.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... FUCM_ECO5E - L-fucose mutarotase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fucU PE=3 SV=1 gi\|193065084, gi... - gi\|75256857\|ref\|ZP_00728451.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|208820948, gi... - gi\|208820948\|ref\|ZP_03261268.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4042], g... FUCM_SHIB3 - L-fucose mutarotase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fucU PE=3 SV=1 gi\|189354939, gi... - gi\|189354939\|gb\|EDU73358.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4401], gi\|16... FUCM_ECO24 - L-fucose mutarotase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fucU PE=3 SV=1 gi\|188014878, gi... - gi\|188014878\|gb\|EDU53000.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189363690, gi... - gi\|189363690\|gb\|EDU82109.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|194439673, gi... - gi\|83584936\|ref\|ZP_00923592.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|168764524, gi... - gi\|189365496\|gb\|EDU83912.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4501], gi\|16... sp\|B7UHM0\|FUCM_ECO27 - L-fucose mutarotase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fucU PE=3 SV=1 gi\|237706564, gi... - gi\|237706564\|ref\|ZP_04537045.1\| fucose operon protein FucU [Escherichia sp. 3_2_53FAA], gi\|226899604... FUCM_ECOBW - L-fucose mutarotase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fucU PE=3 SV=1 gi\|242378356, gi... - gi\|251786083\|ref\|YP_003000387.1\| hypothetical protein B21_02616 [Escherichia coli BL21], gi\|24237835... gi\|253772339, gi... - gi\|254289494\|ref\|YP_003055242.1\| L-fucose mutarotase [Escherichia coli BL21(DE3)], gi\|253978801\|gb\|A... gi\|254037858, gi... - gi\|254037858\|ref\|ZP_04871916.1\| fucose operon protein FucU [Escherichia sp. 1_1_43], gi\|226839482\|gb... gi\|254162735, gi... - gi\|254162735\|ref\|YP_003045843.1\| L-fucose mutarotase [Escherichia coli B str. REL606], gi\|253974636\|... gi\|254794745, gi... - gi\|254794745\|ref\|YP_003079582.1\| L-fucose mutarotase [Escherichia coli O157:H7 str. TW14359], gi\|254... EG10355 - L-fucose mutarotase / L-fucose mutarotase FUCM_ECOL6 - L-fucose mutarotase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fucU PE=3 SV=1 EG10355 - L-fucose mutarotase / L-fucose mutarotase FUCM_ECO57 - L-fucose mutarotase OS=Escherichia coli O157:H7 GN=fucU PE=3 SV=1 gi\|15803326, gi\|... - gi\|15803326\|ref\|NP_289359.1\| protein of fucose operon [Escherichia coli O157:H7 EDL933], gi\|12517283...	2.0E-46	[1..140]	[1..140]
gi\|30064149, gi\|... - gi\|30064149\|ref\|NP_838320.1\| protein of fucose operon [Shigella flexneri 2a str. 2457T], gi\|30042405... FUCM_SHIFL - L-fucose mutarotase OS=Shigella flexneri GN=fucU PE=3 SV=1 gi\|24053218, gi\|... - gi\|24114088\|ref\|NP_708598.1\| protein of fucose operon [Shigella flexneri 2a str. 301], gi\|24053218\|g...	1.0E-45	[1..140]	[1..140]
gi\|37199108, gi\|... - gi\|37680361\|ref\|NP_934970.1\| fucose dissimilation pathway protein FucU [Vibrio vulnificus YJ016], gi...	3.0E-43	[1..139]	[12..152]
FUCM_ACTP7 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=fucU PE=3 SV=1 gi\|32034309 - gi\|32034309\|ref\|ZP_00134509.1\| COG4154: Fucose dissimilation pathway protein FucU [Actinobacillus pl... FUCM_ACTPJ - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=fucU PE=3 SV=1 FUCM_ACTP2 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fucU PE=3 SV=1	3.0E-43	[1..140]	[1..142]
gi\|77958705, gi\|... - gi\|77958705\|ref\|ZP_00822734.1\| COG4154: Fucose dissimilation pathway protein FucU [Yersinia bercovie...	5.0E-43	[1..140]	[1..144]
FUCM_HISS2 - L-fucose mutarotase OS=Histophilus somni (strain 2336) GN=fucU PE=3 SV=1	1.0E-42	[1..140]	[1..142]
gi\|14973676, gi\|... - gi\|15901975\|ref\|NP_346579.1\| fucose operon FucU protein [Streptococcus pneumoniae TIGR4], gi\|1497367... gi\|25302346 - pir\|\|B95253 fucose operon FucU protein [imported] - Streptococcus pneumoniae (strain TIGR4)	2.0E-42	[1..139]	[1..140]
gi\|242244451, gi... - gi\|242244451\|ref\|ZP_04798888.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... gi\|25302348 - pir\|\|H98117 hypothetical protein fucU [imported] - Streptococcus pneumoniae (strain R6) gi\|237650658 - gi\|237650658\|ref\|ZP_04524910.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974] gi\|15459672, gi\|... - gi\|15904012\|ref\|NP_359562.1\| fucose pathway protein, function unknown [Streptococcus pneumoniae R6],... gi\|237822213 - gi\|237822213\|ref\|ZP_04598058.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974M2] gi\|168996145, gi... - gi\|169833643\|ref\|YP_001695520.1\| fucose operon FucU protein [Streptococcus pneumoniae Hungary19A-6],... gi\|220675332, gi... - gi\|221232870\|ref\|YP_002512024.1\| fuscose operon fucU protein [Streptococcus pneumoniae ATCC 700669],... gi\|168491694, gi... - gi\|183574054\|gb\|EDT94582.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC0288-04], gi\|168... gi\|183575903, gi... - gi\|183575903\|gb\|EDT96431.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC3059-06], gi\|168... gi\|147925616, gi... - gi\|148988805\|ref\|ZP_01820220.1\| L-fucose isomerase [Streptococcus pneumoniae SP6-BS73], gi\|147925616... gi\|172042686, gi... - gi\|172042686\|gb\|EDT50732.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC1873-00], gi\|168... gi\|183572194, gi... - gi\|183572194\|gb\|EDT92722.1\| fucose operon FucU protein [Streptococcus pneumoniae SP195], gi\|16848923... gi\|116516128, gi... - gi\|116516128\|ref\|YP_817379.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae D... gi\|147930755, gi... - gi\|149020077\|ref\|ZP_01835051.1\| L-fucose isomerase [Streptococcus pneumoniae SP23-BS72], gi\|14793075... gi\|147759016, gi... - gi\|149003013\|ref\|ZP_01827924.1\| L-fucose isomerase [Streptococcus pneumoniae SP14-BS69], gi\|14775901... gi\|148991983, gi... - gi\|148991983\|ref\|ZP_01821757.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae... gi\|225857732, gi... - gi\|225857732\|ref\|YP_002739243.1\| fucose operon FucU protein [Streptococcus pneumoniae P1031], gi\|225... gi\|225861983, gi... - gi\|225861983\|ref\|YP_002743492.1\| fucose operon FucU protein [Streptococcus pneumoniae Taiwan19F-14],... gi\|225855658, gi... - gi\|225855658\|ref\|YP_002737170.1\| fucose operon FucU protein [Streptococcus pneumoniae JJA], gi\|22572...	2.0E-42	[1..139]	[1..140]
gi\|77973817, gi\|... - gi\|77973817\|ref\|ZP_00829362.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	2.0E-42	[1..139]	[1..138]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTISPLIS PTLLKVLAEM GHGDEIIFSD AHFPAHSLGP QVIRADGLSV SDLLRAIIPL  60
   61 FELDSYAPPL VMMAAVEGDT LDPSVEARYR DALSLEAPCP DIVRIDRYAF YERAQKAFAI 120
  121 VITGECAKYG NILLKKGVTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2ob5A
Description:	No description for 2ob5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00199656218015398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: