YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168238584, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168238584, gi....

Description	E-value	Query Range	Subject Range
gi\|117622526, gi... - gi\|117622526\|ref\|YP_851439.1\| phosphoheptose isomerase [Escherichia coli APEC O1], gi\|115511650\|gb\|A... gi\|91209310, gi\|... - gi\|91209310\|ref\|YP_539296.1\| phosphoheptose isomerase [Escherichia coli UTI89], gi\|91070884\|gb\|ABE05... gi\|226898970, gi... - gi\|237707760\|ref\|ZP_04538241.1\| phosphoheptose isomerase [Escherichia sp. 3_2_53FAA], gi\|226898970\|g...	6.0E-42	[1..192]	[55..246]
GMHA_HISS2 - Phosphoheptose isomerase OS=Histophilus somni (strain 2336) GN=gmhA PE=3 SV=1 gi\|53692692 - gi\|53692692\|ref\|ZP_00347388.1\| COG0279: Phosphoheptose isomerase [Haemophilus somnus 129PT]	7.0E-42	[1..192]	[1..192]
GMHA_ACTSZ - Phosphoheptose isomerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=gmhA PE=3 SV=1	1.0E-41	[1..192]	[1..192]
gi\|26106668, gi\|... - gi\|26246270\|ref\|NP_752309.1\| phosphoheptose isomerase [Escherichia coli CFT073], gi\|26106668\|gb\|AAN7... gi\|24050495, gi\|... - ref\|NP_706225.1\| hypothetical protein SF0272 [Shigella flexneri 2a str. 301], gb\|AAN41932.1\| orf, c... gi\|124501579, gi... - gi\|124526885\|ref\|ZP_01698767.1\| phosphoheptose isomerase [Escherichia coli B], gi\|124501579\|gb\|EAY49...	1.0E-41	[1..192]	[55..246]
gi\|110613913, gi... - gi\|110804365\|ref\|YP_687885.1\| phosphoheptose isomerase [Shigella flexneri 5 str. 8401], gi\|110613913...	2.0E-41	[1..192]	[55..246]
GMHA_ECOLC - Phosphoheptose isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gmhA PE=3 SV=... gi\|984578, gi\|89... - gi\|984578\|dbj\|BAA07584.1\| YafI [Escherichia coli W3110], gi\|89107097\|ref\|AP_000877.1\| D-sedoheptulos... gi\|15829503, gi\|... - gi\|15829503\|ref\|NP_308276.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. Sakai], gi\|1335... GMHA_ECOL5 - Phosphoheptose isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gmhA PE=3 SV=1 GMHA_ECOLI - Phosphoheptose isomerase (EC 5.3.1.-) (Sedoheptulose 7-phosphate isomerase) - Escherichia coli GMHA_ECOL6 - Phosphoheptose isomerase OS=Escherichia coli O6 GN=gmhA PE=3 SV=1 GMHA_ECO57 - Phosphoheptose isomerase OS=Escherichia coli O157:H7 GN=gmhA PE=3 SV=1 GMHA_ECOHS - Phosphoheptose isomerase OS=Escherichia coli O9:H4 (strain HS) GN=gmhA PE=3 SV=1 GMHA_ECO24 - Phosphoheptose isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gmhA PE=3 SV=1 GMHA_SHIFL - Phosphoheptose isomerase OS=Shigella flexneri GN=gmhA PE=3 SV=1 GMHA_SHIBS - Phosphoheptose isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=gmhA PE=3 SV=1 gi\|56383188, gi\|... - gi\|56479637\|ref\|NP_706225.2\| phosphoheptose isomerase [Shigella flexneri 2a str. 301], gi\|56383188\|g... GMHA_SHISS - Phosphoheptose isomerase OS=Shigella sonnei (strain Ss046) GN=gmhA PE=3 SV=1 GMHA_ECOBW - Phosphoheptose isomerase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=gmhA PE=3 SV=1 gi\|253325798, gi... - gi\|254287141\|ref\|YP_003052889.1\| phosphoheptose isomerase [Escherichia coli BL21(DE3)], gi\|253976448... EG13146 - D-sedoheptulose 7-phosphate isomerase / Phosphoheptose isomerase; D-sedoheptulose 7-phosphate isomer... gi\|242376053, gi... - gi\|251783780\|ref\|YP_002998084.1\| hypothetical protein B21_00221 [Escherichia coli BL21], gi\|24237605... gi\|254791381, gi... - gi\|254791381\|ref\|YP_003076218.1\| D-sedoheptulose 7-phosphate isomerase [Escherichia coli O157:H7 str... gi\|254160338, gi... - gi\|254160338\|ref\|YP_003043446.1\| phosphoheptose isomerase [Escherichia coli B str. REL606], gi\|25397... GMHA_ECO81 - Phosphoheptose isomerase OS=Escherichia coli O81 (strain ED1a) GN=gmhA PE=3 SV=1 GMHA_ECO45 - Phosphoheptose isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gmhA PE=3 SV=1 gi\|30040085, gi\|... - gi\|30061841\|ref\|NP_836012.1\| phosphoheptose isomerase [Shigella flexneri 2a str. 2457T], gi\|30040085... GMHA_ECO8A - Phosphoheptose isomerase OS=Escherichia coli O8 (strain IAI1) GN=gmhA PE=3 SV=1 EG13146 - D-sedoheptulose 7-phosphate isomerase / Phosphoheptose isomerase; D-sedoheptulose 7-phosphate isomer... gi\|217320589, gi... - gi\|217324368\|ref\|ZP_03440452.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. TW14588], gi... gi\|15799927, gi\|... - gi\|15799927\|ref\|NP_285939.1\| phosphoheptose isomerase [Escherichia coli O157:H7 EDL933], gi\|12512990... GMHA_ECOLU - Phosphoheptose isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gmhA PE=3 SV=1 GMHA_ECO55 - Phosphoheptose isomerase OS=Escherichia coli (strain 55989 / EAEC) GN=gmhA PE=3 SV=1 gi\|208809134, gi... - gi\|208809134\|ref\|ZP_03251471.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|195938625 - gi\|195938625\|ref\|ZP_03084007.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4024] gi\|194438258, gi... - gi\|194438258\|ref\|ZP_03070350.1\| phosphoheptose isomerase [Escherichia coli 101-1], gi\|194422922\|gb\|E... gi\|194432766, gi... - gi\|194432766\|ref\|ZP_03065051.1\| phosphoheptose isomerase [Shigella dysenteriae 1012], gi\|194419028\|g... GMHA_ECOSE - Phosphoheptose isomerase OS=Escherichia coli (strain SE11) GN=gmhA PE=3 SV=1 GMHA_ECO5E - Phosphoheptose isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gmhA PE=3 SV=1 gi\|208818429, gi... - gi\|208818429\|ref\|ZP_03258749.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|208812426, gi... - gi\|208812426\|ref\|ZP_03253755.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|168750205, gi... - gi\|188015605\|gb\|EDU53727.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|162138492 - gi\|162138492\|ref\|YP_539296.2\| phosphoheptose isomerase [Escherichia coli UTI89] GMHA_ECOL6 - Phosphoheptose isomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=gmhA PE=3... gi\|190904215, gi... - gi\|191165708\|ref\|ZP_03027547.1\| phosphoheptose isomerase [Escherichia coli B7A], gi\|190904215\|gb\|EDV... gi\|188487518, gi... - gi\|188492319\|ref\|ZP_02999589.1\| phosphoheptose isomerase [Escherichia coli 53638], gi\|188487518\|gb\|E... GMHA_SHIB3 - Phosphoheptose isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gmhA PE=3 SV... GMHA_ECOSM - Phosphoheptose isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gmhA PE=3 SV=1 gi\|194427613, gi... - gi\|194427613\|ref\|ZP_03060161.1\| phosphoheptose isomerase [Escherichia coli B171], gi\|194414383\|gb\|ED... gi\|192958067, gi... - gi\|193068704\|ref\|ZP_03049665.1\| phosphoheptose isomerase [Escherichia coli E110019], gi\|192958067\|gb... gi\|193063160, gi... - gi\|193063160\|ref\|ZP_03044251.1\| phosphoheptose isomerase [Escherichia coli E22], gi\|192931068\|gb\|EDV... gi\|191171464, gi... - gi\|191171464\|ref\|ZP_03033013.1\| phosphoheptose isomerase [Escherichia coli F11], gi\|190908398\|gb\|EDV... gi\|168776138, gi... - gi\|187768450\|gb\|EDU32294.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|168770020, gi... - gi\|189361067\|gb\|EDU79486.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|189366408, gi... - gi\|189366408\|gb\|EDU84824.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168757250, gi... - gi\|189355745\|gb\|EDU74164.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4401], gi\|1687... GMHA_ECODH - Phosphoheptose isomerase OS=Escherichia coli (strain K12 / DH10B) GN=gmhA PE=3 SV=1 gi\|189377312, gi... - gi\|189377312\|gb\|EDU95728.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|168789694, gi... - gi\|189370774\|gb\|EDU89190.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|188999630, gi... - gi\|188999630\|gb\|EDU68616.1\| phosphoheptose isomerase [Escherichia coli O157:H7 str. EC4076], gi\|1687...	3.0E-41	[1..192]	[1..192]
GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida (strain Pm70) GN=gmhA PE=3 SV=1 GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida GN=gmhA PE=3 SV=1	3.0E-41	[1..192]	[1..192]
GMHA_SHIDS - Phosphoheptose isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gmhA PE=3 SV=1	4.0E-41	[1..192]	[1..192]
GMHA_YERPG - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gmhA PE=3 SV=1 GMHA_YERP3 - Phosphoheptose isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gmhA PE=3... gi\|89105998, gi\|... - gi\|89105998\|ref\|ZP_01178509.1\| COG0279: Phosphoheptose isomerase [Yersinia pestis biovar Orientalis ... GMHA_YERPA - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gmhA PE=3 SV=1 GMHA_YERPN - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gmhA PE=3 SV=1 GMHA_YERPP - Phosphoheptose isomerase OS=Yersinia pestis (strain Pestoides F) GN=gmhA PE=3 SV=1 gi\|166212970, gi... - gi\|166212970\|ref\|ZP_02239005.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. B42003... gi\|166011055, gi... - gi\|166011055\|ref\|ZP_02231953.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. E19790... gi\|167421465, gi... - gi\|167421465\|ref\|ZP_02313218.1\| phosphoheptose isomerase [Yersinia pestis biovar Orientalis str. MG0... gi\|229695217, gi... - gi\|229838851\|ref\|ZP_04459010.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis biovar Orient... gi\|167399428, gi... - gi\|167399428\|ref\|ZP_02304952.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|229895997, gi... - gi\|229895997\|ref\|ZP_04511167.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis Pestoides A],... gi\|167467191 - gi\|167467191\|ref\|ZP_02331895.1\| phosphoheptose isomerase [Yersinia pestis FV-1] gi\|229899420, gi... - gi\|229899420\|ref\|ZP_04514563.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis biovar Orient... gi\|167057646, gi... - gi\|167423476\|ref\|ZP_02315229.1\| phosphoheptose isomerase [Yersinia pestis biovar Mediaevalis str. K1... gi\|186894252, gi... - gi\|186894252\|ref\|YP_001871364.1\| phosphoheptose isomerase [Yersinia pseudotuberculosis PB1/+], gi\|18... GMHA_YERPY - Phosphoheptose isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gmhA PE=3 SV=... Q66E09\|Q66E09_YERPS - Phosphoheptose isomerase - Yersinia pseudotuberculosis gi\|51588516, gi\|... - gi\|51595234\|ref\|YP_069425.1\| phosphoheptose isomerase [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|45435396, gi\|... - gi\|45440539\|ref\|NP_992078.1\| phosphoheptose isomerase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124854, gi\|... - gi\|22124854\|ref\|NP_668277.1\| phosphoheptose isomerase [Yersinia pestis KIM], gi\|21957685\|gb\|AAM84528... gi\|165926659, gi... - gi\|165926659\|ref\|ZP_02222491.1\| phosphoheptose isomerase [Yersinia pestis biovar Orientalis str. F19... gi\|149291327, gi... - gi\|149364914\|ref\|ZP_01886949.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis CA88-4125], g...	4.0E-41	[1..192]	[1..192]
GMHA_PHOLL - Phosphoheptose isomerase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565... GMHA_PHOLL - Phosphoheptose isomerase OS=Photorhabdus luminescens subsp. laumondii GN=gmhA PE=3 SV=1	5.0E-41	[1..192]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQDLIRNEL NEAAETLANF LKDDANIHAI QRAAVLLADS FKAGGKVLSC GNGGSHCDAM  60
   61 HFAEELTGRY RENRPGYPAI AISDVSHISC VSNDFGYDYI FSRYVEAVGR EGDVLLGIST 120
  121 SGNSGNVIKA IAAAREKGMK VITLTGKDGG KMAGTADIEI RVPHFGYADR IQEIHIKVIH 180
  181 ILIQLIEKEM VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	2i22A
Description:	No description for 2i22A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits