YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224502129
Organism:	Listeria monocytogenes FSL R2-561
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224502129.

Description	E-value	Query Range	Subject Range
gi\|254935577 - gi\|254935577\|ref\|ZP_05267274.1\| histidinol-phosphatase [Listeria monocytogenes F6900] gi\|224498649 - gi\|224498649\|ref\|ZP_03666998.1\| histidinol-phosphatase [Listeria monocytogenes Finland 1988] gi\|126943068, gi... - gi\|254900197\|ref\|ZP_05260121.1\| histidinol-phosphatase [Listeria monocytogenes J0161], gi\|153184004\|... gi\|254911249, gi... - gi\|254911249\|ref\|ZP_05261261.1\| histidinol-phosphatase [Listeria monocytogenes J2818], gi\|153189962\|... gi\|47016944, gi\|... - gi\|47094804\|ref\|ZP_00232419.1\| histidinol-phosphatase [Listeria monocytogenes str. 1/2a F6854], gi\|4...	259.0	[0..1]	[275..1]
gi\|46906815, gi\|... - gi\|46906815\|ref\|YP_013204.1\| histidinol-phosphatase [Listeria monocytogenes str. 4b F2365], gi\|46880...	259.0	[0..1]	[275..1]
gi\|153165868, gi... - gi\|153165868\|ref\|ZP_01926533.1\| histidinol-phosphatase [Listeria monocytogenes FSL N1-017], gi\|13372... gi\|254932155, gi... - gi\|254932155\|ref\|ZP_05265514.1\| histidinol-phosphatase [Listeria monocytogenes HPB2262], gi\|15320120... gi\|47018830, gi\|... - gi\|47092835\|ref\|ZP_00230619.1\| histidinol-phosphatase [Listeria monocytogenes str. 4b H7858], gi\|470... gi\|254879533 - gi\|254879533\|ref\|ZP_05252243.1\| histidinol-phosphatase [Listeria monocytogenes FSL J2-071] gi\|254853230 - gi\|254853230\|ref\|ZP_05242578.1\| histidinol-phosphatase [Listeria monocytogenes FSL R2-503]	259.0	[0..1]	[275..1]
gi\|16413019, gi\|... - pir\|\|AC1505 histidinol phosphate phosphatase homolog hisJ - Listeria innocua (strain Clip11262), gi\|... gi\|16799654 - gi\|16799654\|ref\|NP_469922.1\| histidinol-phosphatase [Listeria innocua Clip11262]	256.0	[0..1]	[275..1]
gi\|221315232 - gi\|221315232\|ref\|ZP_03597037.1\| histidinol-phosphatase [Bacillus subtilis subsp. subtilis str. NCIB ... gi\|221320150 - gi\|221320150\|ref\|ZP_03601444.1\| histidinol-phosphatase [Bacillus subtilis subsp. subtilis str. JH642... gi\|221324431 - gi\|221324431\|ref\|ZP_03605725.1\| histidinol-phosphatase [Bacillus subtilis subsp. subtilis str. SMY] HIS9_BACSU - Histidinol-phosphatase OS=Bacillus subtilis GN=hisK PE=1 SV=1 HIS9_BACSU - Histidinol-phosphatase OS=Bacillus subtilis (strain 168) GN=hisK PE=1 SV=1	225.0	[0..2]	[275..3]
gi\|227895679, gi... - gi\|227895679\|ref\|ZP_04013484.1\| histidinol-phosphatase [Lactobacillus plantarum subsp. plantarum ATC... gi\|28379097, gi\|... - gi\|28379097\|ref\|NP_785989.1\| histidinol-phosphatase [Lactobacillus plantarum WCFS1], gi\|28271935\|emb...	223.0	[0..1]	[270..1]
gi\|53689658, gi\|... - gi\|53689658\|ref\|ZP_00062663.2\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	221.0	[0..1]	[274..2]
gi\|18144464, gi\|... - gi\|18309786\|ref\|NP_561720.1\| sensory box protein/histidinol phosphate phosphatase family protein [Cl...	219.0	[0..4]	[265..366]
HIS9_BACHD - Histidinol-phosphatase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 915... HIS9_BACHD - Histidinol-phosphatase OS=Bacillus halodurans GN=hisK PE=3 SV=1	218.0	[0..2]	[272..3]
gi\|85108654 - gi\|85108654\|ref\|XP_962614.1\| hypothetical protein NCU06974 [Neurospora crassa OR74A] gi\|32413561, gi\|... - gi\|32413561\|ref\|XP_327260.1\| hypothetical protein [Neurospora crassa], gi\|28924224\|gb\|EAA33378.1\| hy...	218.0	[0..1]	[273..1]

Back

Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDGHTHTE FCPHGTHDDV EEMILKAIEL DFDEYSIVEH APLSREFMNN TAGDKEAVTT  60
   61 ASMAMSDLPY YFKKMNHIKK KYASDLLIHI GFEVDYLIGY EDFTRDFLDE YGPQTDDGVL 120
  121 SLHFLEGQGG FRSIDFSAED YNEGIVQFYG GFEQAQLTYL EGVKQSIEAD LGLFKPRRIG 180
  181 HISLCQKFQQ FFGADTSNFS GEVMEEFQAI LALVKKRDYE LDFNTAGLFK SLCGETYPPK 240
  241 EIVTLARELK IPLVYGSDSH GVQDIGRGYN TYCQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits