YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224499492
Organism:	Listeria monocytogenes Finland 1998
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224499492.

Description	E-value	Query Range	Subject Range
gi\|16413414, gi\|... - pir\|\|AB1552 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) - Listeria innocua (strain Cli... gi\|16800024 - gi\|16800024\|ref\|NP_470292.1\| hypothetical protein lin0955 [Listeria innocua Clip11262]	236.0	[0..1]	[377..1]
gi\|46880455, gi\|... - gi\|46907188\|ref\|YP_013577.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes str... gi\|47017065, gi\|... - gi\|47094557\|ref\|ZP_00232216.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes s... gi\|133735959, gi... - gi\|254931338\|ref\|ZP_05264697.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes ... gi\|226223574, gi... - gi\|226223574\|ref\|YP_002757681.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes...	235.0	[0..1]	[377..1]
gi\|255026771 - gi\|255026771\|ref\|ZP_05298757.1\| hypothetical protein LmonocytFSL_11309 [Listeria monocytogenes FSL J... gi\|254898871, gi... - gi\|254898871\|ref\|ZP_05258795.1\| hypothetical protein LmonJ_03620 [Listeria monocytogenes J0161], gi\|... gi\|127632957, gi... - gi\|254832299\|ref\|ZP_05236954.1\| hypothetical protein Lmon1_13174 [Listeria monocytogenes 10403S], gi... gi\|47096243, gi\|... - gi\|47096243\|ref\|ZP_00233841.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes s... gi\|254911640, gi... - gi\|254911640\|ref\|ZP_05261652.1\| hypothetical protein LmonJ2_02500 [Listeria monocytogenes J2818], gi... gi\|254935966, gi... - gi\|254935966\|ref\|ZP_05267663.1\| hypothetical protein LmonF6_02505 [Listeria monocytogenes F6900], gi...	235.0	[0..1]	[377..1]
gi\|89098766, gi\|... - gi\|89098766\|ref\|ZP_01171647.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus sp. NRRL B-1491...	220.0	[0..1]	[375..1]
gi\|20806755 - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon... gi\|223490117, gi... - gi\|254478128\|ref\|ZP_05091511.1\| N-acetylglucosamine-6-phosphate deacetylase [Carboxydibrachium pacif... gi\|20806755, gi\|... - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon...	218.0	[0..2]	[376..8]
gi\|167038854, gi... - gi\|167038854\|ref\|YP_001661839.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter sp.... gi\|242231182, gi... - gi\|242257294\|ref\|ZP_04802164.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter sp. ...	217.0	[0..1]	[375..1]
gi\|90821631, gi\|... - gi\|90962437\|ref\|YP_536353.1\| N-acetylglucosamine-6-phosphate deacetylase [Lactobacillus salivarius U...	216.0	[0..3]	[375..2]
gi\|170711805, gi... - gi\|170711805\|gb\|EDT23987.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium perfringens B s... gi\|110798833, gi... - gi\|110798833\|ref\|YP_696855.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium perfringens A...	216.0	[0..5]	[376..2]
gi\|241902536, gi... - gi\|241902536\|ref\|ZP_04787269.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter broc... gi\|167038412, gi... - gi\|76795488\|ref\|ZP_00777861.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter ethan...	216.0	[0..1]	[375..1]
gi\|18311158, gi\|... - gi\|18311158\|ref\|NP_563092.1\| N-acetylglucosamine-6-phosphate deacetylase [Clostridium perfringens st...	216.0	[0..5]	[376..2]

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Predicted Domain #1

Region A:
Residues: [1-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKVITNAT IYTGKGVLEN AFVRFDKQIL EVGSMADFQA DKAEEVIDAK GQKLVPGFID  60
   61 VHSHGGYSFD AMDADPEALR KQVNGMLNEG ITTYFPTTMT QSHENIEKAL KVINEVAQTE 120
  121 PVIGGIHLEG PFVSKVFKGA QPEEYIQAPD LELFKKWFDI SGGLIKLVTY APEHDTSADF 180
  181 ENLCFELGVV PSIGHSNDVR EHLKTSKATH ATHLYNACHR MTHREPGVPG HVLLERGINA 240
  241 ELIVDGIHVH PDMVKLAYQM KGPEHLCIIT DSMRAKGMPE GKSELGGQTV IVKDKQARLE 300
  301 DGTLAGSVLT YDDGFRNMIK FTGCSVEEAV LMSSGNQARE FNLTQKGAIE AGKDADFNLL 360
  361 DEDLHITATY SFGKKHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1un7A
Description:	The 3-D structure of the N-acetylglucosamine-6-phosphate deacetylse, NagA, from Bacillus subtilis: a member of the urease superfamily
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.00269452684807	bayes_pls_golite062009
N-acetylglucosamine-6-phosphate deacetylase activity	1.87049065683349	bayes_pls_golite062009
deaminase activity	1.75073958887958	bayes_pls_golite062009
catalytic activity	1.70199291046899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: