YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167993553, gi...
Organism:	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167993553, gi....

Description	E-value	Query Range	Subject Range
gi\|62128186, gi\|... - gi\|62180553\|ref\|YP_216970.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|224583523, gi... - gi\|224583523\|ref\|YP_002637321.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar...	2.0E-31	[1..125]	[1..125]
MOPB_PECCC - Protein MopB OS=Pectobacterium carotovorum subsp. carotovorum GN=mopB PE=3 SV=1 gi\|479743 - pir\|\|S35275 probable flagellar biosynthesis protein mopB - Erwinia carotovora subsp. atroseptica MOPB_ERWCA - (P34199) Protein mopB	2.0E-27	[3..125]	[15..139]
gi\|50120650, gi\|... - gi\|50120650\|ref\|YP_049817.1\| flagellar protein [Pectobacterium atrosepticum SCRI1043], gi\|49611176\|e...	8.0E-27	[3..125]	[15..139]
gi\|45441389, gi\|... - gi\|45441389\|ref\|NP_992928.1\| flagellar biosynthesis protein [Yersinia pestis biovar Microtus str. 91... gi\|229701189, gi... - gi\|229896266\|ref\|ZP_04511436.1\| flagellar protein FliO [Yersinia pestis Pestoides A], gi\|229701189\|g...	5.0E-25	[2..125]	[46..177]
gi\|34498583, gi\|... - gi\|34498583\|ref\|NP_902798.1\| flagellar protein FliO [Chromobacterium violaceum ATCC 12472], gi\|34104...	5.0E-25	[8..122]	[17..130]
gi\|145598591, gi... - gi\|145598591\|ref\|YP_001162667.1\| flagellar protein FliO [Yersinia pestis Pestoides F], gi\|145210287\|... gi\|229688971, gi... - gi\|229897930\|ref\|ZP_04513081.1\| flagellar protein FliO [Yersinia pestis biovar Orientalis str. India... gi\|165990224, gi... - gi\|166010880\|ref\|ZP_02231778.1\| flagellar protein fliO [Yersinia pestis biovar Antiqua str. E1979001... gi\|108812463, gi... - gi\|229902839\|ref\|ZP_04517956.1\| flagellar protein FliO [Yersinia pestis Nepal516], gi\|229680286\|gb\|E... gi\|108779106, gi... - gi\|108807193\|ref\|YP_651109.1\| flagellar protein FliO [Yersinia pestis Antiqua], gi\|108779106\|gb\|ABG1... gi\|21959353, gi\|... - gi\|22126368\|ref\|NP_669791.1\| flagellar biosynthesis protein [Yersinia pestis KIM], gi\|21959353\|gb\|AA... gi\|165938776, gi... - gi\|89105453\|ref\|ZP_01177972.1\| COG3190: Flagellar biogenesis protein [Yersinia pestis biovar Orienta... gi\|167420006, gi... - gi\|167420006\|ref\|ZP_02311759.1\| flagellar protein fliO [Yersinia pestis biovar Orientalis str. MG05-... gi\|166207761, gi... - gi\|166210581\|ref\|ZP_02236616.1\| flagellar protein fliO [Yersinia pestis biovar Antiqua str. B4200300... gi\|167467510 - gi\|167467510\|ref\|ZP_02332214.1\| flagellar protein fliO [Yersinia pestis FV-1] gi\|167055194, gi... - gi\|167425795\|ref\|ZP_02317548.1\| flagellar protein fliO [Yersinia pestis biovar Mediaevalis str. K197... gi\|169751160, gi... - gi\|170024626\|ref\|YP_001721131.1\| flagellar biosynthesis protein FliO [Yersinia pseudotuberculosis YP... gi\|229693540, gi... - gi\|229897203\|ref\|ZP_04512359.1\| flagellar protein FliO [Yersinia pestis biovar Orientalis str. PEXU2...	1.0E-24	[2..125]	[46..177]
gi\|77628893, gi\|... - gi\|77628893\|ref\|ZP_00791479.1\| COG3190: Flagellar biogenesis protein [Yersinia pseudotuberculosis IP...	1.0E-24	[2..125]	[46..177]
gi\|213927849, gi... - gi\|213967548\|ref\|ZP_03395696.1\| flagellar protein FliO [Pseudomonas syringae pv. tomato T1], gi\|2139... tr\|Q884W5\|Q884W5... - Flagellar protein FliO OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliO PE=4 SV=1 gi\|28852415, gi\|... - gi\|28869175\|ref\|NP_791794.1\| flagellar protein FliO [Pseudomonas syringae pv. tomato str. DC3000], g...	6.0E-24	[12..124]	[34..145]
gi\|63257381, gi\|... - gi\|66046674\|ref\|YP_236515.1\| flagellar biosynthesis protein, FliO [Pseudomonas syringae pv. syringae... tr\|F3G9F7\|F3G9F7... - Flagellar protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_15488 PE=3 SV=1	1.0E-23	[12..124]	[34..145]
gi\|74017650, gi\|... - gi\|74017650\|ref\|ZP_00688273.1\| Flagellar biosynthesis protein, FliO [Burkholderia ambifaria AMMD], g...	1.0E-23	[6..113]	[51..156]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKTEATVSQ PTAPAGSPLM QVSGALIGII ALILAAAWVI KRMGFAPKGN SVRGLKVSAS  60
   61 ASLGPRERVV IVEVENARLV LGVTASQINL LHTLPPAEND TEAPVAPPAD FQNMMKSLLK 120
  121 RSGRS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.568636
Match:	PF04347.4
Description:	No description for PF04347.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.810	N/A	N/A	d.222.1	YbaB-like
View	Download	0.755	N/A	N/A	d.222.1	YbaB-like
View	Download	0.731	N/A	N/A	b.101.1	Ribonuclease domain of colicin E3
View	Download	0.696	N/A	N/A	d.222.1	YbaB-like
View	Download	0.650	N/A	N/A	d.222.1	YbaB-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits