YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052120
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052120.

Description	E-value	Query Range	Subject Range
gi\|12620102 - gi\|12620102\|gb\|AAG60561.1\|AF250769_2 unknown [uncultured bacterium pCosHE1]	2.0E-54	[1..158]	[1..158]
gi\|82776157, gi\|... - gi\|82776157\|ref\|YP_402504.1\| putative kinase inhibitor protein [Shigella dysenteriae Sd197], gi\|8124...	2.0E-53	[1..158]	[1..158]
gi\|25302206, gi\|... - pir\|\|D85585 hypothetical protein ybhB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188015483, gi... - gi\|188015483\|gb\|EDU53605.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|13360310, gi\|... - gi\|15830105\|ref\|NP_308878.1\| hypothetical protein ECs0851 [Escherichia coli O157:H7], gi\|13360310\|db... gi\|30062258, gi\|... - gi\|30062258\|ref\|NP_836429.1\| putative kinase inhibitor protein [Shigella flexneri 2a str. 2457T], gi... gi\|15800524, gi\|... - gi\|15800524\|ref\|NP_286536.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 EDL933], gi... gi\|56383274, gi\|... - gi\|56479723\|ref\|NP_706651.2\| putative kinase inhibitor protein [Shigella flexneri 2a str. 301], gi\|5... gi\|110614322, gi... - gi\|110804774\|ref\|YP_688294.1\| putative kinase inhibitor protein [Shigella flexneri 5 str. 8401], gi\|... gi\|208738263, gi... - gi\|208822778\|ref\|ZP_03263097.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|208815998, gi... - gi\|208815998\|ref\|ZP_03257177.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|208809096, gi... - gi\|208809096\|ref\|ZP_03251433.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|195936811 - gi\|195936811\|ref\|ZP_03082193.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 str. EC4... gi\|218357205, gi... - gi\|218549664\|ref\|YP_002383455.1\| putative kinase inhibitor protein [Escherichia fergusonii ATCC 3546... gi\|217324297, gi... - gi\|217324297\|ref\|ZP_03440381.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 s... gi\|13360310, gi\|... - gi\|15830105\|ref\|NP_308878.1\| putative kinase inhibitor protein [Escherichia coli O157:H7 str. Sakai]... gi\|209158670, gi... - gi\|209397270\|ref\|YP_002269442.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 ... gi\|168776429, gi... - gi\|187768158\|gb\|EDU32002.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|168767271, gi... - gi\|189363383\|gb\|EDU81802.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|168763415, gi... - gi\|189366477\|gb\|EDU84893.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|189355849, gi... - gi\|189355849\|gb\|EDU74268.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|194416777, gi... - gi\|194434995\|ref\|ZP_03067237.1\| phosphatidylethanolamine-binding protein [Shigella dysenteriae 1012]... gi\|189376936, gi... - gi\|189376936\|gb\|EDU95352.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|254591367, gi... - gi\|254791967\|ref\|YP_003076804.1\| predicted kinase inhibitor [Escherichia coli O157:H7 str. TW14359],... gi\|168786984, gi... - gi\|189373000\|gb\|EDU91416.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ... gi\|189003113, gi... - gi\|189003113\|gb\|EDU72099.1\| phosphatidylethanolamine-binding protein [Escherichia coli O157:H7 str. ...	8.0E-53	[1..158]	[1..158]
gi\|260843015\|ref... - putative kinase inhibitor [Escherichia coli O103:H2 str. 12009] gi\|75255324, gi\|... - gi\|75255324\|ref\|ZP_00727153.1\| COG1881: Phospholipid-binding protein [Escherichia coli E22], gi\|1930... gi\|75208773, gi\|... - gi\|75208773\|ref\|ZP_00709062.1\| COG1881: Phospholipid-binding protein [Escherichia coli B171], gi\|194... gi\|164457635 - gi\|164457635\|dbj\|BAF96542.1\| predicted kinase inhibitor [Escherichia coli O103:H2] gi\|195182793 - gi\|195182793\|dbj\|BAG66373.1\| predicted protein [Escherichia coli O111:H-] gi\|33323008 - gi\|33323008\|gb\|AAQ07242.1\|AF497476_3 YbhB [Escherichia coli]	1.0E-52	[1..158]	[1..158]
gi\|12620125 - gi\|12620125\|gb\|AAG60577.1\|AF250776_1 hypothetical 17.1 kDa protein in modC-bioA intergenic region [u...	1.0E-52	[1..158]	[1..158]
gi\|260854064\|ref... - putative kinase inhibitor [Escherichia coli O26:H11 str. 11368] gi\|253972751, gi... - gi\|254160850\|ref\|YP_003043958.1\| predicted kinase inhibitor [Escherichia coli B str. REL606], gi\|253... gi\|254287664, gi... - gi\|254287664\|ref\|YP_003053412.1\| predicted kinase inhibitor [Escherichia coli BL21(DE3)], gi\|2539769... gi\|251784292, gi... - gi\|251784292\|ref\|YP_002998596.1\| hypothetical protein B21_00757 [Escherichia coli BL21], gi\|24237656... gi\|238862607, gi... - gi\|238900031\|ref\|YP_002925827.1\| putative kinase inhibitor [Escherichia coli BW2952], gi\|238862607\|g... gi\|194439744, gi... - gi\|83584843\|ref\|ZP_00923502.1\| COG1881: Phospholipid-binding protein [Escherichia coli 101-1], gi\|19... YBHB_ECOLI - UPF0098 protein ybhB - Escherichia coli gi\|74311317, gi\|... - gi\|74311317\|ref\|YP_309736.1\| putative kinase inhibitor protein [Shigella sonnei Ss046], gi\|73854794\|... gi\|89107624, gi\|... - gi\|89107624\|ref\|AP_001404.1\| predicted kinase inhibitor [Escherichia coli str. K-12 substr. W3110], ... EG11238 - kinase inhibitor homolog, UPF0098 family / Raf kinase inhibitor RKIP homolog, function unknown; UPF0... gi\|169755799, gi... - gi\|170020871\|ref\|YP_001725825.1\| putative kinase inhibitor protein [Escherichia coli ATCC 8739], gi\|... gi\|260866940\|ref... - putative kinase inhibitor [Escherichia coli O111:H- str. 11128] gi\|75189814, gi\|... - gi\|75189814\|ref\|ZP_00703081.1\| COG1881: Phospholipid-binding protein [Escherichia coli E24377A], gi\|... gi\|169888267, gi... - gi\|170080432\|ref\|YP_001729752.1\| kinase inhibitor [Escherichia coli str. K-12 substr. DH10B], gi\|169... gi\|209918017, gi... - gi\|209918017\|ref\|YP_002292101.1\| putative kinase inhibitor protein [Escherichia coli SE11], gi\|20991... gi\|218553356, gi... - gi\|218553356\|ref\|YP_002386269.1\| putative kinase inhibitor protein [Escherichia coli IAI1], gi\|21836... gi\|75235851, gi\|... - gi\|75235851\|ref\|ZP_00720006.1\| COG1881: Phospholipid-binding protein [Escherichia coli E110019], gi\|... gi\|218694246, gi... - gi\|218694246\|ref\|YP_002401913.1\| putative kinase inhibitor protein [Escherichia coli 55989], gi\|2183... gi\|188494855, gi... - gi\|75511376\|ref\|ZP_00734061.1\| COG1881: Phospholipid-binding protein [Escherichia coli 53638], gi\|18... gi\|164457617 - gi\|164457617\|dbj\|BAF96526.1\| predicted kinase inhibitor [Escherichia coli O26:H11] gi\|157160248, gi... - gi\|75194925\|ref\|ZP_00704995.1\| COG1881: Phospholipid-binding protein [Escherichia coli HS], gi\|15716... gi\|164457626 - gi\|164457626\|dbj\|BAF96534.1\| predicted kinase inhibitor [Escherichia coli O111:H-] EG11238 - kinase inhibitor homolog, UPF0098 family / Raf kinase inhibitor RKIP homolog, function unknown; UPF0... gi\|191168434, gi... - gi\|75228361\|ref\|ZP_00715009.1\| COG1881: Phospholipid-binding protein [Escherichia coli B7A], gi\|1911...	1.0E-52	[1..158]	[1..158]
gi\|455168 - gi\|455168\|gb\|AAA23513.1\| ORF 1 [Escherichia coli]	2.0E-52	[1..158]	[1..158]
gi\|167994440, gi... - gi\|205327709\|gb\|EDZ14473.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=ybhB] [protein=putative kinase inhibitor protein] [protein_id=YP_005236511.1] [location=comple... gi\|16764155, gi\|... - gi\|16764155\|ref\|NP_459770.1\| putative kinase inhibitor protein [Salmonella typhimurium LT2], gi\|1641...	2.0E-52	[1..158]	[1..158]
gi\|56128363, gi\|... - gi\|56414106\|ref\|YP_151181.1\| putative kinase inhibitor protein [Salmonella enterica subsp. enterica ... gi\|197094505, gi... - gi\|197363028\|ref\|YP_002142665.1\| putative kinase inhibitor protein [Salmonella enterica subsp. enter...	2.0E-52	[1..158]	[1..158]
gi\|91071376, gi\|... - gi\|91209802\|ref\|YP_539788.1\| putative kinase inhibitor protein [Escherichia coli UTI89], gi\|91071376... gi\|218364447, gi... - gi\|218557678\|ref\|YP_002390591.1\| putative kinase inhibitor protein [Escherichia coli S88], gi\|218364... gi\|218688558, gi... - gi\|218688558\|ref\|YP_002396770.1\| putative kinase inhibitor protein [Escherichia coli ED1a], gi\|21842... gi\|170680241, gi... - gi\|170680241\|ref\|YP_001742876.1\| phosphatidylethanolamine-binding protein [Escherichia coli SMS-3-5]... gi\|117622956, gi... - gi\|117622956\|ref\|YP_851869.1\| putative kinase inhibitor protein [Escherichia coli APEC O1], gi\|11551... gi\|237707270, gi... - gi\|237707270\|ref\|ZP_04537751.1\| ybhB [Escherichia sp. 3_2_53FAA], gi\|226898480\|gb\|EEH84739.1\| ybhB [... gi\|26246740, gi\|... - gi\|26246740\|ref\|NP_752780.1\| putative kinase inhibitor protein [Escherichia coli CFT073], gi\|2610713... gi\|227839018, gi... - gi\|227884266\|ref\|ZP_04002071.1\| kinase inhibitor protein [Escherichia coli 83972], gi\|227839018\|gb\|E...	3.0E-52	[1..158]	[1..158]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLISNDLRD GDKLPHRHVF NGMGYDGDNI SPHLAWDDVP MGTKSFVVTC YDPDAPTGSG  60
   61 WWHWVVVNLP ADTRVLTQGF GSGLVAVPDG VIQTRTDFGK AGYGGAAPPK GETHRYIFTV 120
  121 HALDVERLDV DEDASGAMVG FNVHFHSLAS ASITAMFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1fjjA
Description:	Hypothetical protein YbhB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0492177793392175	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: