YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168232590, gi...
Organism:	Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168232590, gi....

Description	E-value	Query Range	Subject Range
gi\|194709405, gi... - gi\|194733903\|ref\|YP_002116403.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|195632271, gi... - gi\|195632271\|gb\|EDX50755.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|56415379, gi\|... - gi\|56415379\|ref\|YP_152454.1\| hypothetical protein SPA3327 [Salmonella enterica subsp. enterica serov... gi\|168260825, gi... - gi\|205350242\|gb\|EDZ36873.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|62129598, gi\|... - gi\|62181965\|ref\|YP_218382.1\| hypothetical protein SC3395 [Salmonella enterica subsp. enterica serova... gi\|168235047, gi... - gi\|197291590\|gb\|EDY30942.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|161616492, gi... - gi\|161616492\|ref\|YP_001590456.1\| hypothetical protein SPAB_04307 [Salmonella enterica subsp. enteric... gi\|224469784, gi... - gi\|224585256\|ref\|YP_002639055.1\| hypothetical protein SPC_3530 [Salmonella enterica subsp. enterica ... gi\|204928566, gi... - gi\|204928566\|ref\|ZP_03219765.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Javiana st... gi\|200388370, gi... - gi\|200388370\|ref\|ZP_03214982.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197364309, gi... - gi\|197364309\|ref\|YP_002143946.1\| hypothetical protein SSPA3105 [Salmonella enterica subsp. enterica ...	7.0E-41	[1..103]	[1..103]
gi\|46916534, gi\|... - gi\|54303106\|ref\|YP_133099.1\| hypothetical protein PBPRB1432 [Photobacterium profundum SS9], gi\|46916...	1.0E-38	[5..103]	[17..115]
gi\|28901461, gi\|... - gi\|28901461\|ref\|NP_801116.1\| hypothetical protein VPA1606 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28810008 - gi\|28810008\|dbj\|BAC62949.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153837283, gi... - gi\|153837283\|ref\|ZP_01989950.1\| protein YdhR [Vibrio parahaemolyticus AQ3810], gi\|149749423\|gb\|EDM60...	3.0E-37	[5..102]	[4..101]
gi\|91191951, gi\|... - gi\|91223138\|ref\|ZP_01258404.1\| hypothetical protein V12G01_04826 [Vibrio alginolyticus 12G01], gi\|91...	3.0E-37	[5..101]	[4..100]
gi\|90412360, gi\|... - gi\|90412360\|ref\|ZP_01220364.1\| hypothetical protein P3TCK_11264 [Photobacterium profundum 3TCK], gi\|...	9.0E-37	[3..102]	[2..101]
Q665T5\|Q665T5_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|21960513, gi\|... - gi\|22127423\|ref\|NP_670846.1\| hypothetical protein y3549 [Yersinia pestis KIM], gi\|21960513\|gb\|AAM870... gi\|167418717, gi... - gi\|167418717\|ref\|ZP_02310470.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Orientalis str.... gi\|25337271 - pir\|\|AH0077 conserved hypothetical protein YPO0629 [imported] - Yersinia pestis (strain CO92) gi\|167054620, gi... - gi\|167426397\|ref\|ZP_02318150.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Mediaevalis str... gi\|51597723, gi\|... - gi\|51597723\|ref\|YP_071914.1\| hypothetical protein YPTB3426 [Yersinia pseudotuberculosis IP 32953], g... gi\|167466780 - gi\|167466780\|ref\|ZP_02331484.1\| putative monooxygenase, YdhR [Yersinia pestis FV-1] gi\|229690001, gi... - gi\|229842935\|ref\|ZP_04463086.1\| hypothetical protein YPF_1283 [Yersinia pestis biovar Orientalis str... gi\|45442711, gi\|... - gi\|45442711\|ref\|NP_994250.1\| hypothetical protein YP_2946 [Yersinia pestis biovar Microtus str. 9100... gi\|170022856, gi... - gi\|170022856\|ref\|YP_001719361.1\| hypothetical protein YPK_0605 [Yersinia pseudotuberculosis YPIII], ... gi\|229696886, gi... - gi\|229840520\|ref\|ZP_04460679.1\| hypothetical protein YPH_2862 [Yersinia pestis biovar Orientalis str... gi\|186699933, gi... - gi\|186896907\|ref\|YP_001874019.1\| hypothetical protein YPTS_3609 [Yersinia pseudotuberculosis PB1/+],... gi\|229837306, gi... - gi\|229837306\|ref\|ZP_04457469.1\| hypothetical protein YPS_1220 [Yersinia pestis Pestoides A], gi\|2297... gi\|15978719, gi\|... - gi\|218927823\|ref\|YP_002345698.1\| hypothetical protein YPO0629 [Yersinia pestis CO92], gi\|16120955\|re... gi\|77635768, gi\|... - gi\|77635768\|ref\|ZP_00797849.1\| hypothetical protein YpesA_01000945 [Yersinia pestis Angola], gi\|1624... gi\|77630432, gi\|... - gi\|77630432\|ref\|ZP_00793018.1\| hypothetical protein YpseI_01001803 [Yersinia pseudotuberculosis IP 3... gi\|145209420, gi... - gi\|145597724\|ref\|YP_001161800.1\| hypothetical protein YPDSF_0414 [Yersinia pestis Pestoides F], gi\|1... gi\|150260338, gi... - gi\|150260338\|ref\|ZP_01917066.1\| hypothetical protein YPE_2639 [Yersinia pestis CA88-4125], gi\|149289... gi\|165992315, gi... - gi\|166008976\|ref\|ZP_02229874.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Antiqua str. E1... gi\|166206582, gi... - gi\|166211836\|ref\|ZP_02237871.1\| putative monooxygenase, YdhR [Yersinia pestis biovar Antiqua str. B4... gi\|108781065, gi... - gi\|108809152\|ref\|YP_653068.1\| hypothetical protein YPA_3161 [Yersinia pestis Antiqua], gi\|108781065\|... gi\|108810657, gi... - gi\|229900849\|ref\|ZP_04515973.1\| hypothetical protein YP516_0508 [Yersinia pestis Nepal516], gi\|22968... gi\|165937829, gi... - gi\|89103727\|ref\|ZP_01176293.1\| hypothetical protein Ypesb_01002279 [Yersinia pestis biovar Orientali...	3.0E-36	[3..101]	[2..100]
gi\|83754036, gi\|... - gi\|83754037\|pdb\|2ASY\|B Chain B, Solution Structure Of Ydhr Protein From Escherichia Coli, gi\|8375403...	2.0E-35	[4..101]	[25..122]
gi\|170019983, gi... - gi\|170019983\|ref\|YP_001724937.1\| hypothetical protein EcolC_1964 [Escherichia coli ATCC 8739], gi\|16... gi\|194417035, gi... - gi\|194434697\|ref\|ZP_03066950.1\| YdhR protein [Shigella dysenteriae 1012], gi\|194417035\|gb\|EDX33151.1... gi\|169889162, gi... - gi\|170081327\|ref\|YP_001730647.1\| putative mono-oxygenase [Escherichia coli str. K-12 substr. DH10B],... gi\|218361001, gi... - gi\|218554233\|ref\|YP_002387146.1\| hypothetical protein ECIAI1_1718 [Escherichia coli IAI1], gi\|218361... gi\|209918980, gi... - gi\|209918980\|ref\|YP_002293064.1\| hypothetical protein ECSE_1789 [Escherichia coli SE11], gi\|20991223... gi\|218351960, gi... - gi\|218695228\|ref\|YP_002402895.1\| hypothetical protein EC55989_1834 [Escherichia coli 55989], gi\|2183... gi\|124498459, gi... - gi\|124531604\|ref\|ZP_01701815.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498459\|gb... EG13952 - putative monooxygenase / Predicted monooxygenase, function unknown; dimeric gi\|110805643, gi... - gi\|110805643\|ref\|YP_689163.1\| hypothetical protein SFV_1689 [Shigella flexneri 5 str. 8401], gi\|1106... YDHR_SHIFL - Putative monooxygenase YdhR OS=Shigella flexneri GN=ydhR PE=3 SV=1 gi\|24113056, gi\|... - gi\|24113056\|ref\|NP_707566.1\| hypothetical protein SF1695 [Shigella flexneri 2a str. 301], gi\|2405202... gi\|30041433, gi\|... - gi\|30063181\|ref\|NP_837352.1\| hypothetical protein S1827 [Shigella flexneri 2a str. 2457T], gi\|300414... EG13952 - putative monooxygenase / Predicted monooxygenase, function unknown; dimeric gi\|193064954, gi... - gi\|75257084\|ref\|ZP_00728644.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E22]... gi\|75512901, gi\|... - gi\|75512901\|ref\|ZP_00735382.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli 5363... gi\|193071602, gi... - gi\|75214851\|ref\|ZP_00713334.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E110... gi\|190904024, gi... - gi\|75230887\|ref\|ZP_00717336.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli B7A]... gi\|89108507, gi\|... - gi\|89108507\|ref\|AP_002287.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238862986, gi... - gi\|238900882\|ref\|YP_002926678.1\| hypothetical protein BWG_1481 [Escherichia coli BW2952], gi\|2388629... gi\|74312008, gi\|... - gi\|74312008\|ref\|YP_310427.1\| hypothetical protein SSON_1489 [Shigella sonnei Ss046], gi\|73855485\|gb\|... gi\|82543965, gi\|... - gi\|82543965\|ref\|YP_407912.1\| hypothetical protein SBO_1465 [Shigella boydii Sb227], gi\|81245376\|gb\|A... gi\|75190704, gi\|... - gi\|75190704\|ref\|ZP_00703971.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli E243... gi\|157066812, gi... - gi\|75195744\|ref\|ZP_00705814.1\| COG0113: Delta-aminolevulinic acid dehydratase [Escherichia coli HS],... YDHR_ECOLI - Protein ydhR precursor - Escherichia coli gi\|75175192, gi\|... - gi\|75175192\|ref\|ZP_00695510.1\| COG0113: Delta-aminolevulinic acid dehydratase [Shigella boydii BS512...	3.0E-35	[4..101]	[3..100]
gi\|168758817, gi... - gi\|189354431\|gb\|EDU72850.1\| YdhR protein [Escherichia coli O157:H7 str. EC4401], gi\|168758817\|ref\|ZP... gi\|189359632, gi... - gi\|189359632\|gb\|EDU78051.1\| YdhR protein [Escherichia coli O157:H7 str. EC4486], gi\|168771669\|ref\|ZP... gi\|187766769, gi... - gi\|187766769\|gb\|EDU30613.1\| YdhR protein [Escherichia coli O157:H7 str. EC4196], gi\|168778258\|ref\|ZP... gi\|188998815, gi... - gi\|188998815\|gb\|EDU67801.1\| YdhR protein [Escherichia coli O157:H7 str. EC4076], gi\|168783940\|ref\|ZP... gi\|168752353, gi... - gi\|188013787\|gb\|EDU51909.1\| YdhR protein [Escherichia coli O157:H7 str. EC4113], gi\|168752353\|ref\|ZP... gi\|13361841, gi\|... - gi\|15831628\|ref\|NP_310401.1\| hypothetical protein ECs2374 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25337268, gi\|... - pir\|\|B85774 hypothetical protein Z2694 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|208731134, gi... - gi\|208816791\|ref\|ZP_03257911.1\| YdhR protein [Escherichia coli O157:H7 str. EC4045], gi\|208731134\|gb... gi\|208820925, gi... - gi\|208820925\|ref\|ZP_03261245.1\| YdhR protein [Escherichia coli O157:H7 str. EC4042], gi\|208741048\|gb... gi\|15802079, gi\|... - gi\|15802079\|ref\|NP_288101.1\| hypothetical protein Z2694 [Escherichia coli O157:H7 EDL933], gi\|125156... gi\|209161041, gi... - gi\|209399641\|ref\|YP_002270735.1\| YdhR protein [Escherichia coli O157:H7 str. EC4115], gi\|209161041\|g... gi\|13361841, gi\|... - gi\|15831628\|ref\|NP_310401.1\| hypothetical protein ECs2374 [Escherichia coli O157:H7], gi\|13361841\|db... gi\|217328726, gi... - gi\|217328726\|ref\|ZP_03444807.1\| YdhR protein [Escherichia coli O157:H7 str. TW14588], gi\|217318073\|g... gi\|189370047, gi... - gi\|189370047\|gb\|EDU88463.1\| YdhR protein [Escherichia coli O157:H7 str. EC869], gi\|168790493\|ref\|ZP_... gi\|254793284, gi... - gi\|254793284\|ref\|YP_003078121.1\| hypothetical protein ECSP_2234 [Escherichia coli O157:H7 str. TW143... gi\|168802692, gi... - gi\|189375372\|gb\|EDU93788.1\| YdhR protein [Escherichia coli O157:H7 str. EC508], gi\|168802692\|ref\|ZP_... gi\|195940245 - gi\|195940245\|ref\|ZP_03085627.1\| hypothetical protein EscherichcoliO157_28266 [Escherichia coli O157:... gi\|208724806, gi... - gi\|208810290\|ref\|ZP_03252166.1\| YdhR protein [Escherichia coli O157:H7 str. EC4206], gi\|208724806\|gb...	1.0E-34	[4..101]	[3..100]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTLLQIHF NFSGPFGEEM TQQLVGLAES INEEPGFIWK IWTESEKNQQ AGGIYLFESE  60
   61 ETAQAYIKKH TARLKNLGVD EVTFTLFGVN DALTKINHGN LCR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1wd6A
Description:	crystal structure of JW1657 from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits