YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213858022
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213858022.

Description	E-value	Query Range	Subject Range
gi\|76177 - pir\|\|QQECFT yabC protein - Escherichia coli (strain K-12) gi\|115511492, gi... - gi\|117622368\|ref\|YP_851281.1\| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1], gi\|11551...	0.0	[1..313]	[34..346]
RSMH_ECO57 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O157:H7 GN=rsmH PE=3 SV=1 gi\|89106965, gi\|... - gi\|89106965\|ref\|AP_000745.1\| S-adenosyl-dependent methyltransferase activity on membrane-located sub... RSMH_ECOUT - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain UTI89 / UPEC) GN=rsmH PE... MRAW_ECOLI - S-adenosyl-L-methionine-dependent methyltransferase mraW (EC 2.1.1.-) - Escherichia coli gi\|13359542, gi\|... - gi\|15829340\|ref\|NP_308113.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. Sakai]... RSMH_ECOL5 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... RSMH_ECOHS - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O9:H4 (strain HS) GN=rsmH PE=3 S... gi\|194429383, gi... - gi\|75209397\|ref\|ZP_00709629.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|191167757, gi... - gi\|75229069\|ref\|ZP_00715649.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|192955859, gi... - gi\|75234319\|ref\|ZP_00718697.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|190905079, gi... - gi\|75235489\|ref\|ZP_00719693.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|193065897, gi... - gi\|75256046\|ref\|ZP_00727759.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|188494231, gi... - gi\|75511694\|ref\|ZP_00734332.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMH_ECOLC - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|168801509, gi... - gi\|189376342\|gb\|EDU94758.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508],... RSMH_ECOSM - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rsmH... RSMH_ECODH - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain K12 / DH10B) GN=rsmH PE=... gi\|208727474, gi... - gi\|208807673\|ref\|ZP_03250010.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... gi\|83585196, gi\|... - gi\|83585196\|ref\|ZP_00923846.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|195939298 - gi\|195939298\|ref\|ZP_03084680.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... RSMH_SHIB3 - Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... gi\|208741941, gi... - gi\|208821818\|ref\|ZP_03262138.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... RSMH_ECO24 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... gi\|208812612, gi... - gi\|208812612\|ref\|ZP_03253941.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... gi\|188014531, gi... - gi\|188014531\|gb\|EDU52653.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113]... gi\|168764039, gi... - gi\|189365898\|gb\|EDU84314.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501]... gi\|168755690, gi... - gi\|189356993\|gb\|EDU75412.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401]... gi\|187767771, gi... - gi\|187767771\|gb\|EDU31615.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196]... gi\|168771306, gi... - gi\|189359899\|gb\|EDU78318.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486]... gi\|189370778, gi... - gi\|189370778\|gb\|EDU89194.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869],... gi\|189000502, gi... - gi\|189000502\|gb\|EDU69488.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076]... EG11085 - 16S rRNA m(4)C1402 methyltransferase, SAM-dependent / 16S rRNA m(4)C1402 methyltransferase, SAM-depe... gi\|15799766, gi\|... - gi\|15799766\|ref\|NP_285778.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933], gi... EG11085 - 16S rRNA m(4)C1402 methyltransferase, SAM-dependent / 16S rRNA m(4)C1402 methyltransferase, SAM-depe... RSMH_ECOK1 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O1:K1 / APEC GN=rsmH PE=3 SV=2 RSMH_SHIBS - Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii serotype 4 (strain Sb227) GN=rsmH... gi\|237704231, gi... - gi\|237704231\|ref\|ZP_04534712.1\| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA], gi\|22... RSMH_ECOBW - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... MRAW_ECOBB - S-adenosyl-L-methionine-dependent methyltransferase mraW OS=Escherichia coli (strain B / BL21) GN=mr... RSMH_ECOBD - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain B / BL21-DE3) GN=rsmH PE... gi\|226840603, gi... - gi\|254037497\|ref\|ZP_04871574.1\| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43], gi\|22684... RSMH_ECOBR - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain B / REL606) GN=rsmH PE=3... gi\|254791219, gi... - gi\|254791219\|ref\|YP_003076056.1\| S-adenosyl-dependent methyltransferase activity on membrane-located... RSMH_ECOSE - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain SE11) GN=rsmH PE=3 SV=1 RSMH_ECO5E - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... RSMH_ESCF3 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia fergusonii (strain ATCC 35469 / DSM 1... gi\|217320902, gi... - gi\|217324681\|ref\|ZP_03440765.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW1... RSMH_ECO45 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=r... RSMH_ECO8A - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O8 (strain IAI1) GN=rsmH PE=3 SV... RSMH_ECOLU - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExP... RSMH_ECO55 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain 55989 / EAEC) GN=rsmH PE...	0.0	[1..313]	[1..313]
RSMH_SHISS - Ribosomal RNA small subunit methyltransferase H OS=Shigella sonnei (strain Ss046) GN=rsmH PE=3 SV=1	0.0	[1..313]	[1..313]
gi\|30039891, gi\|... - gi\|30061649\|ref\|NP_835820.1\| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T], gi... RSMH_SHIFL - Ribosomal RNA small subunit methyltransferase H OS=Shigella flexneri GN=rsmH PE=3 SV=1 gi\|24050285, gi\|... - gi\|24111527\|ref\|NP_706037.1\| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301], gi\|2...	0.0	[1..313]	[1..313]
RSMH_SHIF8 - Ribosomal RNA small subunit methyltransferase H OS=Shigella flexneri serotype 5b (strain 8401) GN=rs...	0.0	[1..313]	[1..313]
RSMH_SHIDS - Ribosomal RNA small subunit methyltransferase H OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	0.0	[1..312]	[1..312]
RSMH_ECOL6 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... RSMH_ECOL6, MRAW... - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O6 GN=rsmH PE=3 SV=1, S-adenosyl...	0.0	[1..313]	[1..313]
RSMH_SALEP - Ribosomal RNA small subunit methyltransferase H OS=Salmonella enteritidis PT4 (strain P125109) GN=rs... RSMH_SALPC - Ribosomal RNA small subunit methyltransferase H OS=Salmonella paratyphi C (strain RKS4594) GN=rsmH P... RSMH_SALA4 - Ribosomal RNA small subunit methyltransferase H OS=Salmonella agona (strain SL483) GN=rsmH PE=3 SV=1 RSMH_SALDC - Ribosomal RNA small subunit methyltransferase H OS=Salmonella dublin (strain CT_02021853) GN=rsmH PE... gi\|200386674, gi... - gi\|200386674\|ref\|ZP_03213286.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enteri... RSMH_SALG2 - Ribosomal RNA small subunit methyltransferase H OS=Salmonella gallinarum (strain 287/91 / NCTC 13346... gi\|205342387, gi... - gi\|205342387\|gb\|EDZ29151.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... MRAW_SALTY - S-adenosyl-L-methionine-dependent methyltransferase mraW OS=Salmonella typhimurium GN=mraW PE=3 SV=1 RSMH_SALHS - Ribosomal RNA small subunit methyltransferase H OS=Salmonella heidelberg (strain SL476) GN=rsmH PE=3... gi\|194469862, gi... - gi\|194469862\|ref\|ZP_03075846.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enteri... RSMH_SALSV - Ribosomal RNA small subunit methyltransferase H OS=Salmonella schwarzengrund (strain CVM19633) GN=rs... gi\|205335013, gi... - gi\|205335013\|gb\|EDZ21777.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... gi\|197292032, gi... - gi\|197292032\|gb\|EDY31382.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... gi\|205337535, gi... - gi\|205337535\|gb\|EDZ24299.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... gi\|238911177 - gi\|238911177\|ref\|ZP_04655014.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enteri... gi\|205348778, gi... - gi\|205348778\|gb\|EDZ35409.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=mraW] [protein=S-adenosyl-methyltransferase MraW] [protein_id=YP_005235779.1] [location=141119... gi\|167550685, gi... - gi\|205324445\|gb\|EDZ12284.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... MRAW_SALTY, RSMH... - Ribosomal RNA small subunit methyltransferase H OS=Salmonella typhimurium GN=rsmH PE=3 SV=1, S-adeno... gi\|205331448, gi... - gi\|205331448\|gb\|EDZ18212.1\| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica s... RSMH_SALTY - Ribosomal RNA small subunit methyltransferase H OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A...	0.0	[1..313]	[1..313]
RSMH_SALPA, MRAW... - Ribosomal RNA small subunit methyltransferase H OS=Salmonella paratyphi A GN=rsmH PE=3 SV=1, S-adeno... RSMH_SALPK - Ribosomal RNA small subunit methyltransferase H OS=Salmonella paratyphi A (strain AKU_12601) GN=rsmH... RSMH_SALPA - Ribosomal RNA small subunit methyltransferase H OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42...	0.0	[1..313]	[1..313]
RSMH_YERPB - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pseudotuberculosis serotype IB (strain P... gi\|22127508, gi\|... - gi\|22127508\|ref\|NP_670931.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM], gi\|21960606\|gb... gi\|229843023, gi... - gi\|229843023\|ref\|ZP_04463173.1\| S-adenosyl-dependent methyltransferase protein with activity on memb... RSMH_YERPS - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pseudotuberculosis serotype I (strain IP... RSMH_YERPN - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=... gi\|165919812, gi... - gi\|165928201\|ref\|ZP_02224033.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis... gi\|229696801, gi... - gi\|229840435\|ref\|ZP_04460594.1\| S-adenosyl-dependent methyltransferase protein with activity on memb... gi\|45438238, gi\|... - gi\|45443369\|ref\|NP_994908.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus str.... gi\|166008805, gi... - gi\|166008805\|ref\|ZP_02229703.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua st... gi\|229837062, gi... - gi\|229837062\|ref\|ZP_04457227.1\| S-adenosyl-dependent methyltransferase protein with activity on memb... RSMH_YERPS, MRAW... - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pseudotuberculosis GN=rsmH PE=3 SV=1, S-... gi\|166212069, gi... - gi\|166212069\|ref\|ZP_02238104.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua st... gi\|16120875, gi\|... - gi\|218927743\|ref\|YP_002345618.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92], gi\|161208... gi\|149289826, gi... - gi\|150260418\|ref\|ZP_01917146.1\| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125], gi\|1492898... gi\|167401265, gi... - gi\|167401265\|ref\|ZP_02306765.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua st... gi\|166960185, gi... - gi\|167422048\|ref\|ZP_02313801.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis... RSMH_YERPG - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rs... gi\|167426442, gi... - gi\|167426442\|ref\|ZP_02318195.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevali... RSMH_YERP3 - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pseudotuberculosis serotype O:1b (strain... gi\|89104754, gi\|... - gi\|89104754\|ref\|ZP_01177288.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|167470126 - gi\|167470126\|ref\|ZP_02334830.1\| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1] RSMH_YERPA - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=r... RSMH_YERPY - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pseudotuberculosis serotype O:3 (strain ... RSMH_YERPE - Ribosomal RNA small subunit methyltransferase H OS=Yersinia pestis GN=rsmH PE=3 SV=1	0.0	[3..311]	[10..318]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMENFKHTTV LLDEAVNGLN IRPDGIYIDG TFGRGGHSRL ILSQLGEEGR LLAIDRDPQA  60
   61 IAVAQTINDP RFSIIHGPFS ALADYVAERE LTGKIDGILL DLGVSSPQLD DAERGFSFMR 120
  121 DGPLDMRMDP TRGQSAAEWL QTAEEADIAW VLKTFGEERF AKRIAHAIVE RNREQPMTRT 180
  181 KELAEVVAAA TPVKDKFKHP ATRTFQAVRI WVNSELEEIE QALKSSLSVL ASGGRLSIIS 240
  241 FHSLEDRIVK RFMREQSRGP QVPAGLPMTE AQLKKLGGRE LRALGKLMPG EKEVAENPRA 300
  301 RSSVLRIAER TNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.154902
Match:	1wg8A
Description:	Crystal structure of a predicted S-adenosylmethionine-dependent methyltransferase TT1512 from Thermus thermophilus HB8.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits