YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194423626, gi...
Organism:	Escherichia coli 101-1
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194423626, gi....

Description	E-value	Query Range	Subject Range
CITG_ECOUT - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli (strain UTI89 / UPEC) ... gi\|226898624, gi... - gi\|237707414\|ref\|ZP_04537895.1\| triphosphoribosyl-dephospho-CoA transferase [Escherichia sp. 3_2_53F... CITG_ECOK1 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O1:K1 / APEC GN=citG P... CITG_ECO45 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O45:K1 (strain S88 / E...	336.0	[0..1]	[292..1]
CITG_SHIF8 - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Shigella flexneri serotype 5b ...	336.0	[0..1]	[292..1]
CITG_ECOL6 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O6 GN=citG PE=3 SV=1 CITG_ECO81 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O81 (strain ED1a) GN=c... CITG_ECOL6 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O6:H1 (strain CFT073 /...	335.0	[0..1]	[292..1]
CITG_ECOL5 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Escherichia coli O6:K15:H31 (strain 536...	334.0	[0..1]	[292..1]
CITG_SHISS - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Shigella sonnei (strain Ss046)...	334.0	[0..1]	[292..1]
gi\|30062070, gi\|... - gi\|30062070\|ref\|NP_836241.1\| triphosphoribosyl-dephospho-CoA synthase [Shigella flexneri 2a str. 245... CITG_SHIFL - Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase OS=Shigella flexneri GN=citG PE=3...	334.0	[0..1]	[292..1]
gi\|75514707 - gi\|75514707\|ref\|ZP_00736962.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|75258650 - gi\|75258650\|ref\|ZP_00730057.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|193069121, gi... - gi\|75236595\|ref\|ZP_00720683.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|75229502, gi\|... - gi\|75229502\|ref\|ZP_00716049.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|194413996, gi... - gi\|75210759\|ref\|ZP_00710891.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|75194797 - gi\|75194797\|ref\|ZP_00704867.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli... gi\|83586952 - gi\|83586952\|ref\|ZP_00925582.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli...	332.0	[0..3]	[292..1]
gi\|75189652 - gi\|75189652\|ref\|ZP_00702919.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli...	331.0	[0..3]	[292..1]
gi\|190907392, gi... - gi\|75240769\|ref\|ZP_00724676.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Escherichia coli...	330.0	[0..3]	[292..1]
gi\|77977176 - gi\|77977176\|ref\|ZP_00832632.1\| COG1767: Triphosphoribosyl-dephospho-CoA synthetase [Yersinia interme...	327.0	[0..7]	[291..11]

Back

Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPATSTKT TKLATSLIDE YALLGWRAML TEVNLSPKPG LVDRINCGAH KDMALEDFHR  60
   61 SALAIQGWLP RFIEFGACSA EMAPEAVLHG LRPIGMACEG DMFRATAGVN THKGSIFSLG 120
  121 LLCAAIGRLL QLNQPVTPTT VCSTAASFCR GLTDRELRTN NSQLTAGQRL YQQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.874	0.003	transferase activity	a.24.3	Cytochromes

Predicted Domain #2

Region A:
Residues: [175-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTGARGEAE AGYPLVINHA LPHYLTLLDQ GLDPELALLD TLLLLMAING DTNVASRGGE  60
   61 GGLRWLQREA QTLLQKGGIR TPADLDYLRQ FDRECIERNL SPGGSADLLI LTWFLAQI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits