YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167552933, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167552933, gi....

Description	E-value	Query Range	Subject Range
gi\|16122529, gi\|... - gi\|218929397\|ref\|YP_002347272.1\| hypothetical protein YPO2305 [Yersinia pestis CO92], gi\|16122529\|re... gi\|229902231, gi... - gi\|229902231\|ref\|ZP_04517352.1\| hypothetical protein YP516_1959 [Yersinia pestis Nepal516], gi\|22968... gi\|167425047, gi... - gi\|167425047\|ref\|ZP_02316800.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|51589833, gi\|... - gi\|51596551\|ref\|YP_070742.1\| hypothetical protein YPTB2227 [Yersinia pseudotuberculosis IP 32953], g... gi\|166958915, gi... - gi\|167422103\|ref\|ZP_02313856.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229837823, gi... - gi\|229837823\|ref\|ZP_04457982.1\| hypothetical protein YPH_0039 [Yersinia pestis biovar Orientalis str... gi\|229894983, gi... - gi\|229894983\|ref\|ZP_04510161.1\| hypothetical protein YPS_2763 [Yersinia pestis Pestoides A], gi\|2297... gi\|186698636, gi... - gi\|186895610\|ref\|YP_001872722.1\| hypothetical protein YPTS_2304 [Yersinia pseudotuberculosis PB1/+],... gi\|229898384, gi... - gi\|229898384\|ref\|ZP_04513531.1\| hypothetical protein YPF_2813 [Yersinia pestis biovar Orientalis str... gi\|165913411, gi... - gi\|89104623\|ref\|ZP_01177161.1\| hypothetical protein Ypesb_01001371 [Yersinia pestis biovar Orientali... gi\|108779561, gi... - gi\|108807648\|ref\|YP_651564.1\| hypothetical protein YPA_1653 [Yersinia pestis Antiqua], gi\|108779561\|... gi\|166010669, gi... - gi\|166010669\|ref\|ZP_02231567.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165920862, gi... - gi\|165927194\|ref\|ZP_02223026.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167400918, gi... - gi\|167400918\|ref\|ZP_02306424.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166210991, gi... - gi\|166210991\|ref\|ZP_02237026.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q66AA5\|Q66AA5_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|149365782, gi... - gi\|149365782\|ref\|ZP_01887817.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149292195\|... gi\|145209837, gi... - gi\|145598141\|ref\|YP_001162217.1\| hypothetical protein YPDSF_0839 [Yersinia pestis Pestoides F], gi\|1... gi\|162352620, gi... - gi\|77636204\|ref\|ZP_00798280.1\| hypothetical protein YpesA_01000381 [Yersinia pestis Angola], gi\|1624... gi\|77629300, gi\|... - gi\|77629300\|ref\|ZP_00791886.1\| hypothetical protein YpseI_01000629 [Yersinia pseudotuberculosis IP 3... gi\|25343458 - pir\|\|AB0281 probable exported protein YPO2305 [imported] - Yersinia pestis (strain CO92) gi\|45436748, gi\|... - gi\|45441885\|ref\|NP_993424.1\| hypothetical protein YP_2090 [Yersinia pestis biovar Microtus str. 9100... gi\|22126024, gi\|... - gi\|22126024\|ref\|NP_669447.1\| hypothetical protein y2136 [Yersinia pestis KIM], gi\|21958974\|gb\|AAM856...	6.0E-21	[1..87]	[1..90]
gi\|77975376, gi\|... - gi\|77975376\|ref\|ZP_00830912.1\| hypothetical protein YfreA_01001000 [Yersinia frederiksenii ATCC 3364...	2.0E-20	[1..87]	[1..90]
gi\|77979499 - gi\|77979499\|ref\|ZP_00834917.1\| hypothetical protein YintA_01000680 [Yersinia intermedia ATCC 29909]	6.0E-20	[1..87]	[1..90]
gi\|36785512, gi\|... - gi\|37526082\|ref\|NP_929426.1\| hypothetical protein plu2166 [Photorhabdus luminescens subsp. laumondii...	7.0E-20	[1..87]	[1..90]
gi\|77958021 - gi\|77958021\|ref\|ZP_00822062.1\| hypothetical protein YberA_01001713 [Yersinia bercovieri ATCC 43970]	1.0E-19	[1..87]	[1..90]
gi\|77963334 - gi\|77963334\|ref\|ZP_00827145.1\| hypothetical protein YmolA_01000465 [Yersinia mollaretii ATCC 43969]	1.0E-19	[1..87]	[1..90]
gi\|83585391 - gi\|83585391\|ref\|ZP_00924037.1\| hypothetical protein Ecol1_01003369 [Escherichia coli 101-1]	1.0E-19	[1..88]	[18..104]
gi\|85675042, gi\|... - gi\|89108445\|ref\|AP_002225.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown gi\|169889103, gi... - gi\|170081268\|ref\|YP_001730588.1\| hypothetical protein ECDH10B_1737 [Escherichia coli str. K-12 subst... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown YDGH_ECOLI - Protein ydgH precursor - Escherichia coli gi\|238900820, gi... - gi\|238900820\|ref\|YP_002926616.1\| hypothetical protein BWG_1419 [Escherichia coli BW2952], gi\|2388629...	2.0E-19	[1..88]	[1..90]
gi\|74313769, gi\|... - gi\|74313769\|ref\|YP_312188.1\| hypothetical protein SSON_3380 [Shigella sonnei Ss046], gi\|73857246\|gb\|...	3.0E-19	[1..88]	[18..104]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKYIIASL GLATLLSFGA NAAVHQVNAE QAQNLQPMGT ISVSQIGSTP MDMRQEIVAK  60
   61 AEKAGANSYR IIELKEGDNW HATAELYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits