YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213025791
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213025791.

Description	E-value	Query Range	Subject Range
CEDA_SALTY - Cell division activator cedA OS=Salmonella typhimurium GN=cedA PE=3 SV=1 CEDA_SALTY - Cell division activator CedA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cedA... CEDA_SALTY - Cell division activator CedA OS=Salmonella typhimurium GN=cedA PE=3 SV=1	2.0E-34	[1..80]	[1..80]
CEDA_ECOL5 - Cell division activator CedA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cedA PE=3 SV=1 CEDA_ECOUT - Cell division activator CedA OS=Escherichia coli (strain UTI89 / UPEC) GN=cedA PE=3 SV=2 CEDA_ECOL6 - Cell division activator CedA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cedA ... CEDA_ECOL6 - Cell division activator CedA OS=Escherichia coli O6 GN=cedA PE=3 SV=2 gi\|190907955, gi... - gi\|191171625\|ref\|ZP_03033172.1\| cell division activator CedA [Escherichia coli F11], gi\|190907955\|gb... CEDA_ECOK1 - Cell division activator CedA OS=Escherichia coli O1:K1 / APEC GN=cedA PE=3 SV=2	5.0E-34	[1..80]	[1..80]
gi\|75241394 - gi\|75241394\|ref\|ZP_00725245.1\| hypothetical protein EcolF_01001685 [Escherichia coli F11] gi\|26247983, gi\|... - gi\|26247983\|ref\|NP_754023.1\| cell division modulator [Escherichia coli CFT073], gi\|26108386\|gb\|AAN80... gi\|91072519, gi\|... - gi\|91210945\|ref\|YP_540931.1\| cell division modulator [Escherichia coli UTI89], gi\|91072519\|gb\|ABE074... gi\|218689672, gi... - gi\|218689672\|ref\|YP_002397884.1\| cell division modulator [Escherichia coli ED1a], gi\|218427236\|emb\|C... gi\|215486948, gi... - gi\|215486948\|ref\|YP_002329379.1\| cell division modulator [Escherichia coli O127:H6 str. E2348/69], g... gi\|227885846, gi... - gi\|227885846\|ref\|ZP_04003651.1\| cell division modulator [Escherichia coli 83972], gi\|227837419\|gb\|EE... gi\|117623903, gi... - gi\|117623903\|ref\|YP_852816.1\| cell division modulator [Escherichia coli APEC O1], gi\|115513027\|gb\|AB... gi\|226900437, gi... - gi\|237705680\|ref\|ZP_04536161.1\| cell division regulatory protein CedA [Escherichia sp. 3_2_53FAA], g...	5.0E-34	[1..80]	[8..87]
gi\|254592749, gi... - gi\|254793349\|ref\|YP_003078186.1\| cell division modulator [Escherichia coli O157:H7 str. TW14359], gi... gi\|242377452, gi... - gi\|251785179\|ref\|YP_002999483.1\| hypothetical protein B21_01688 [Escherichia coli BL21], gi\|24237745... gi\|168749451, gi... - gi\|188016238\|gb\|EDU54360.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4113], gi\|... CEDA_ECOBW - Cell division activator CedA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=cedA PE=3 SV=1 gi\|189356144, gi... - gi\|189356144\|gb\|EDU74563.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168762203, gi... - gi\|189367526\|gb\|EDU85942.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189360660, gi... - gi\|189360660\|gb\|EDU79079.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4486], gi\|... CEDA_ECO24 - Cell division activator CedA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cedA PE=3 SV=1 gi\|208724803, gi... - gi\|208810287\|ref\|ZP_03252163.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4206],... CEDA_ECOHS - Cell division activator CedA OS=Escherichia coli O9:H4 (strain HS) GN=cedA PE=3 SV=1 CEDA_SHIF8 - Cell division activator CedA OS=Shigella flexneri serotype 5b (strain 8401) GN=cedA PE=3 SV=2 gi\|208731021, gi... - gi\|208816678\|ref\|ZP_03257798.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4045],... gi\|24112871, gi\|... - ref\|NP_707381.1\| hypothetical protein SF1497 [Shigella flexneri 2a str. 301], gb\|AAN43088.1\| orf, c... gi\|194428537, gi... - gi\|75210218\|ref\|ZP_00710386.1\| hypothetical protein EcolB_01002632 [Escherichia coli B171], gi\|19442... gi\|208739154, gi... - gi\|208819031\|ref\|ZP_03259351.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4042],... gi\|192926558, gi... - gi\|75256133\|ref\|ZP_00727829.1\| hypothetical protein EcolE2_01003872 [Escherichia coli E22], gi\|19306... CEDA_ECO5E - Cell division activator CedA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cedA PE=3 SV=1 CEDA_ECOSE - Cell division activator CedA OS=Escherichia coli (strain SE11) GN=cedA PE=3 SV=1 gi\|217318206, gi... - gi\|217328859\|ref\|ZP_03444940.1\| cell division activator CedA [Escherichia coli O157:H7 str. TW14588]... EG13992 - cell division modulator / DNA-binding protein that modulates cell division; relieves inhibition of c... gi\|187769395, gi... - gi\|187769395\|gb\|EDU33239.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|189000357, gi... - gi\|189000357\|gb\|EDU69343.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168788129, gi... - gi\|189371957\|gb\|EDU90373.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|189377538, gi... - gi\|189377538\|gb\|EDU95954.1\| cell division activator CedA [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|188490704, gi... - gi\|188495505\|ref\|ZP_03002775.1\| cell division activator CedA [Escherichia coli 53638], gi\|188490704\|... gi\|124499542, gi... - gi\|124529989\|ref\|ZP_01700801.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499542\|gb... gi\|192957737, gi... - gi\|193068942\|ref\|ZP_03049901.1\| cell division activator CedA [Escherichia coli E110019], gi\|19295773... CEDA_SHIFL - Cell division activator CedA OS=Shigella flexneri GN=cedA PE=3 SV=2 gi\|194433502, gi... - gi\|194433502\|ref\|ZP_03065780.1\| cell division activator CedA [Shigella dysenteriae 1012], gi\|1944182... gi\|194438520, gi... - gi\|83586030\|ref\|ZP_00924668.1\| hypothetical protein Ecol1_01002765 [Escherichia coli 101-1], gi\|1944... CEDA_SHISS - Cell division activator CedA OS=Shigella sonnei (strain Ss046) GN=cedA PE=3 SV=2 gi\|195937415 - gi\|195937415\|ref\|ZP_03082797.1\| cell division modulator [Escherichia coli O157:H7 str. EC4024] CEDA_ECO57 - Cell division activator CedA OS=Escherichia coli O157:H7 GN=cedA PE=3 SV=2 gi\|148887351 - gi\|148887351\|sp\|P0AE60.2\|CEDA_ECOLI RecName: Full=Cell division activator cedA EG13992 - cell division modulator / DNA-binding protein that modulates cell division; relieves inhibition of c...	1.0E-33	[1..80]	[1..80]
gi\|15831691, gi\|... - gi\|15831691\|ref\|NP_310464.1\| cell division modulator [Escherichia coli O157:H7 str. Sakai], gi\|13361... gi\|110805460, gi... - gi\|110805460\|ref\|YP_688980.1\| cell division modulator [Shigella flexneri 5 str. 8401], gi\|110615008\|... gi\|89108570, gi\|... - gi\|89108570\|ref\|AP_002350.1\| cell division modulator [Escherichia coli str. K-12 substr. W3110], gi\|... gi\|169754850, gi... - gi\|170019922\|ref\|YP_001724876.1\| cell division modulator [Escherichia coli ATCC 8739], gi\|169754850\|... gi\|56479916, gi\|... - gi\|56479916\|ref\|NP_707381.2\| cell division modulator [Shigella flexneri 2a str. 301], gi\|56383467\|gb... gi\|75513773 - gi\|75513773\|ref\|ZP_00736149.1\| hypothetical protein Ecol5_01002230 [Escherichia coli 53638] gi\|218361065, gi... - gi\|218554297\|ref\|YP_002387210.1\| cell division modulator [Escherichia coli IAI1], gi\|218361065\|emb\|C... gi\|74311950, gi\|... - gi\|74311950\|ref\|YP_310369.1\| cell division modulator [Shigella sonnei Ss046], gi\|73855427\|gb\|AAZ8813... gi\|169889223, gi... - gi\|170081388\|ref\|YP_001730708.1\| cell division modulator [Escherichia coli str. K-12 substr. DH10B],... gi\|218432326, gi... - gi\|218705229\|ref\|YP_002412748.1\| cell division modulator [Escherichia coli UMN026], gi\|218432326\|emb... gi\|218352021, gi... - gi\|218695289\|ref\|YP_002402956.1\| cell division modulator [Escherichia coli 55989], gi\|218352021\|emb\|... CEDA_SHIFL - Cell division activator cedA - Shigella flexneri CEDA_ECOLI - Cell division activator cedA - Escherichia coli CEDA_ECO57 - Cell division activator cedA - Escherichia coli O157:H7 gi\|30041251, gi\|... - gi\|30063002\|ref\|NP_837173.1\| cell division modulator [Shigella flexneri 2a str. 2457T], gi\|30041251\|... gi\|12515747, gi\|... - gi\|15802142\|ref\|NP_288164.1\| cell division modulator [Escherichia coli O157:H7 EDL933], gi\|12515747\|... gi\|75227708, gi\|... - gi\|75227708\|ref\|ZP_00714443.1\| hypothetical protein EcolB7_01003898 [Escherichia coli B7A], gi\|19116... gi\|16129685, gi\|... - gi\|1788026\|gb\|AAC74801.1\| cell division modulator [Escherichia coli K12], gi\|16129685\|ref\|NP_416245.... gi\|75236800 - gi\|75236800\|ref\|ZP_00720871.1\| hypothetical protein EcolE1_01001977 [Escherichia coli E110019] gi\|83569668 - gi\|83569668\|ref\|ZP_00921119.1\| hypothetical protein Sdys1_01002150 [Shigella dysenteriae 1012] gi\|254288578, gi... - gi\|254288578\|ref\|YP_003054326.1\| cell division modulator [Escherichia coli BL21(DE3)], gi\|253977885\|... gi\|253973691, gi... - gi\|254161790\|ref\|YP_003044898.1\| cell division modulator [Escherichia coli B str. REL606], gi\|253973...	1.0E-33	[1..80]	[8..87]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKPLRQQNR QIISYIPRVE PAPPEHAIKM DTFRDVWILR GKYVAFVLTG ESFQRSPAFS  60
   61 VPESAQRWAN QVRQENEIAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	2bn8A
Description:	No description for 2bn8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits