YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213162031
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213162031.

Description	E-value	Query Range	Subject Range
gi\|16422149, gi\|... - gi\|16766874\|ref\|NP_462489.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16422149\|... gi\|205330812, gi... - gi\|205330812\|gb\|EDZ17576.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=yhiN] [protein=hypothetical protein] [protein_id=YP_005239801.1] [location=complement(3770767....	4.0E-68	[1..397]	[1..397]
gi\|59710693, gi\|... - gi\|59710693\|ref\|YP_203469.1\| oxidoreductase [Vibrio fischeri ES114], gi\|59478794\|gb\|AAW84581.1\| pred...	6.0E-68	[1..394]	[1..394]
gi\|224585381, gi... - gi\|224585381\|ref\|YP_002639180.1\| hypothetical protein SPC_3658 [Salmonella enterica subsp. enterica ... gi\|62182087, gi\|... - gi\|62182087\|ref\|YP_218504.1\| hypothetical protein SC3517 [Salmonella enterica subsp. enterica serova...	1.0E-67	[1..397]	[1..397]
gi\|75828074 - gi\|75828074\|ref\|ZP_00757509.1\| COG2081: Predicted flavoproteins [Vibrio cholerae O395]	3.0E-66	[2..392]	[3..393]
gi\|254225597, gi... - gi\|75820013\|ref\|ZP_00750071.1\| COG2081: Predicted flavoproteins [Vibrio cholerae V51], gi\|254225597\|...	3.0E-66	[2..392]	[6..396]
gi\|75816417 - gi\|75816417\|ref\|ZP_00746888.1\| COG2081: Predicted flavoproteins [Vibrio cholerae V52] gi\|229369293, gi... - gi\|229606638\|ref\|YP_002877286.1\| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae MJ-1236], gi\|2293... gi\|75829377, gi\|... - gi\|75829377\|ref\|ZP_00758682.1\| COG2081: Predicted flavoproteins [Vibrio cholerae MO10], gi\|116188253... gi\|229517069, gi... - gi\|229517069\|ref\|ZP_04406515.1\| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae RC9], gi\|229346132... gi\|229354072, gi... - gi\|229508955\|ref\|ZP_04398445.1\| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae B33], gi\|229354072... gi\|229508363, gi... - gi\|229508363\|ref\|ZP_04397867.1\| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae BX 330286], gi\|229...	3.0E-66	[2..392]	[3..393]
gi\|229691087, gi... - gi\|229841748\|ref\|ZP_04461904.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia pe... gi\|229904286, gi... - gi\|229904286\|ref\|ZP_04519397.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia pe... gi\|115349573, gi... - gi\|218930962\|ref\|YP_002348837.1\| hypothetical protein YPO3966 [Yersinia pestis CO92], gi\|16124094\|re... gi\|25350354 - pir\|\|AH0482 conserved hypothetical protein YPO3966 [imported] - Yersinia pestis (strain CO92) gi\|167468066 - gi\|167468066\|ref\|ZP_02332770.1\| hypothetical protein YpesF_09244 [Yersinia pestis FV-1] gi\|150261077, gi... - gi\|150261077\|ref\|ZP_01917805.1\| hypothetical protein YPE_3428 [Yersinia pestis CA88-4125], gi\|149290... gi\|229836455, gi... - gi\|229836455\|ref\|ZP_04456622.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia pe... gi\|229839665, gi... - gi\|229839665\|ref\|ZP_04459824.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia pe...	3.0E-66	[1..398]	[1..398]
gi\|126520351, gi... - gi\|153822145\|ref\|ZP_01974812.1\| conserved hypothetical protein [Vibrio cholerae B33], gi\|126520351\|g... gi\|153818201, gi... - gi\|153818201\|ref\|ZP_01970868.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|11282019 - pir\|\|A82366 conserved hypothetical protein VC0080 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|227080316, gi... - gi\|227080316\|ref\|YP_002808867.1\| hypothetical protein VCM66_0080 [Vibrio cholerae M66-2], gi\|2270082... gi\|9654477, gi\|1... - gi\|9654477\|gb\|AAF93258.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|121727773, gi... - gi\|121727773\|ref\|ZP_01680849.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121629897\|g... gi\|121587648, gi... - gi\|121587648\|ref\|ZP_01677411.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215480... gi\|125617406, gi... - gi\|254851466\|ref\|ZP_05240816.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254847171\|... gi\|124118563, gi... - gi\|153222883\|ref\|ZP_01953507.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241185...	4.0E-66	[2..392]	[6..396]
gi\|51598099, gi\|... - gi\|51598099\|ref\|YP_072290.1\| hypothetical protein YPTB3809 [Yersinia pseudotuberculosis IP 32953], g... gi\|152960999, gi... - gi\|153949504\|ref\|YP_001402978.1\| hypothetical protein YpsIP31758_4032 [Yersinia pseudotuberculosis I... Q664G0\|Q664G0_YERPS - Putative uncharacterized protein precursor - Yersinia pseudotuberculosis	4.0E-66	[1..398]	[1..398]
tr\|D7HGX6\|D7HGX6... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_00077 PE=4 SV=1 gi\|116217851, gi... - gi\|75824576\|ref\|ZP_00754026.1\| COG2081: Predicted flavoproteins [Vibrio cholerae RC385], gi\|25422341...	7.0E-66	[2..392]	[6..396]

Back

Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFDAVIIG AGAAGMFCAA QAGQAGSRVL LIDNGKKPGR KILMSGGGRC NFTNLYVEPA  60
   61 AYLSQNPHFC KSALARYTQW DFIDLVGRYG IAWHEKTLGQ LFCDDSAQRI VDMLVAECDK 120
  121 GGVTMRLRSE VLSVERDESG FVLALNGETV TTQKLVIASG GLSMPGLGAS PFGYKIAEQF 180
  181 GLKVLPTRAG LVPFTLHKPL LEQLQTLSGV SVPCVITARN GTVFRENLLF THRGLSGPAV 240
  241 LQISSYWQPG ELVSINLLPD LSLEDVLNEQ RNAHPNQSLK NTLAMHLPKR LVECLQQLGL 300
  301 IPDVSLRQLN VRDQQTLVDT LTAWQVQPNG TEGYRTAEVT LGGVDTNELS SRTMEARRVP 360
  361 GLYFIGEVMD VTGWLGGYNF QWAWSSAWAC AQDLIALKIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	2gqfA
Description:	No description for 2gqfA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.801310714631797	bayes_pls_golite062009
oxidoreductase activity	0.540992934867798	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: