YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226328740, gi...
Organism:	Proteus penneri ATCC 35198
Length:	62 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226328740, gi....

Description	E-value	Query Range	Subject Range
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	97.0	[0..1]	[55..31]
CSRA_VIBFM - Carbon storage regulator homolog OS=Vibrio fischeri (strain MJ11) GN=csrA PE=3 SV=1 CSRA_VIBF1 - Carbon storage regulator homolog OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=csrA PE=3 SV=1	96.0	[0..1]	[61..1]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	96.0	[0..1]	[60..1]
CSRA_SHEDO - Carbon storage regulator homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 150...	96.0	[0..1]	[60..1]
gi\|255056263, gi... - gi\|255056263\|ref\|ZP_05308481.1\| carbon storage regulator, CsrA [Pectobacterium wasabiae WPP163], gi\|... CSRA_PECCP - Carbon storage regulator homolog OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=cs... gi\|224460032 - gi\|224460032\|gb\|ACN43566.1\| RsmA [Pectobacterium carotovorum subsp. carotovorum] CSRA_PECAS - Carbon storage regulator homolog OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... gi\|86559126, gi\|... - gi\|86559126\|gb\|ABD04038.1\| RsmA [Pectobacterium carotovorum], gi\|5360966\|emb\|CAB46440.1\| RsmA protei... CSRA_PECSS - Carbon storage regulator homolog OS=Pectobacterium sp. (strain SCC3193) GN=csrA PE=3 SV=1 CSRA_ERWCT - Carbon storage regulator homolog OS=Erwinia carotovora subsp. atroseptica GN=csrA PE=1 SV=1 gi\|227329398 - gi\|227329398\|ref\|ZP_03833422.1\| carbon storage regulator [Pectobacterium carotovorum subsp. carotovo... gi\|227114945 - gi\|227114945\|ref\|ZP_03828601.1\| carbon storage regulator [Pectobacterium carotovorum subsp. brasilie... gi\|247537236, gi... - gi\|251788615\|ref\|YP_003003336.1\| carbon storage regulator, CsrA [Dickeya zeae Ech1591], gi\|247537236... gi\|242238446, gi... - gi\|242238446\|ref\|YP_002986627.1\| carbon storage regulator, CsrA [Dickeya dadantii Ech703], gi\|242130...	95.0	[0..1]	[60..1]
CSRA_PSYCK - Carbon storage regulator homolog OS=Psychrobacter cryohalolentis (strain K5) GN=csrA PE=3 SV=1	95.0	[0..1]	[60..1]
gi\|88813105, gi\|... - gi\|88813105\|ref\|ZP_01128346.1\| carbon storage regulator [Nitrococcus mobilis Nb-231], gi\|88789589\|gb...	95.0	[0..1]	[61..1]
gi\|124509854, gi... - gi\|124546586\|ref\|ZP_01705653.1\| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi\|124... CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1 CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...	95.0	[0..1]	[60..1]
CSRA_PSYA2 - Carbon storage regulator homolog OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=csrA PE=3 S...	95.0	[0..1]	[60..1]
CSRA_SHESM - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-4) GN=csrA PE=3 SV=1 CSRA_SHESR - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-7) GN=csrA PE=3 SV=1 CSRA_SHEPA - Carbon storage regulator homolog OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=csrA PE=3 ... CSRA_SHEB8 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS185) GN=csrA PE=3 SV=1 CSRA_SHEON - Carbon storage regulator homolog OS=Shewanella oneidensis (strain MR-1) GN=csrA PE=3 SV=1 SO3426 - carbon storage regulator CSRA_SHEB5 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=csrA PE=3 S... CSRA_SHEB2 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS223) GN=csrA PE=3 SV=1 CSRA_SHEHH - Carbon storage regulator homolog OS=Shewanella halifaxensis (strain HAW-EB4) GN=csrA PE=3 SV=1 CSRA_SHEB9 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS195) GN=csrA PE=3 SV=1 CSRA_SHESA - Carbon storage regulator homolog OS=Shewanella sp. (strain ANA-3) GN=csrA PE=3 SV=1	94.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILTRRVGE TLMIGDDVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQAEKTQPTD  60
   61 NY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2btiA
Description:	Structure-function studies of the RmsA CsrA post-transcriptional global regulator protein family reveals a class of RNA-binding structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits