YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194737346, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194737346, gi....

Description	E-value	Query Range	Subject Range
gi\|227327253 - gi\|227327253\|ref\|ZP_03831277.1\| colicin V production protein [Pectobacterium carotovorum subsp. caro... gi\|49612502, gi\|... - gi\|50121976\|ref\|YP_051143.1\| colicin V production protein [Pectobacterium atrosepticum SCRI1043], gi...	2.0E-33	[1..161]	[1..161]
gi\|37527054, gi\|... - gi\|37527054\|ref\|NP_930398.1\| colicin V production protein [Photorhabdus luminescens subsp. laumondii...	3.0E-33	[1..160]	[1..160]
gi\|238785197, gi... - gi\|77957377\|ref\|ZP_00821435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|238718694, gi... - gi\|77960843\|ref\|ZP_00824698.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	4.0E-32	[1..160]	[1..160]
gi\|77976972, gi\|... - gi\|77976972\|ref\|ZP_00832435.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	2.0E-31	[1..160]	[1..160]
gi\|238710549, gi... - gi\|238751275\|ref\|ZP_04612769.1\| Colicin V production protein [Yersinia rohdei ATCC 43380], gi\|238710... gi\|77975506, gi\|... - gi\|77975506\|ref\|ZP_00831041.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro...	2.0E-31	[1..160]	[1..160]
gi\|165992704, gi... - gi\|166008322\|ref\|ZP_02229220.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. E1... gi\|165925155, gi... - gi\|165925155\|ref\|ZP_02220987.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|167398849, gi... - gi\|167398849\|ref\|ZP_02304373.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. UG... gi\|166214249, gi... - gi\|166214249\|ref\|ZP_02240284.1\| colicin V production protein [Yersinia pestis biovar Antiqua str. B4... gi\|167424537, gi... - gi\|167424537\|ref\|ZP_02316290.1\| colicin V production protein [Yersinia pestis biovar Mediaevalis str... gi\|167421236, gi... - gi\|167421236\|ref\|ZP_02312989.1\| colicin V production protein [Yersinia pestis biovar Orientalis str.... gi\|169750309, gi... - gi\|170023775\|ref\|YP_001720280.1\| colicin V production protein [Yersinia pseudotuberculosis YPIII], g... gi\|167469034 - gi\|167469034\|ref\|ZP_02333738.1\| colicin V production protein [Yersinia pestis FV-1] gi\|165937015, gi... - gi\|89103389\|ref\|ZP_01175969.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229694707, gi... - gi\|229838341\|ref\|ZP_04458500.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|77635317, gi\|... - gi\|77635317\|ref\|ZP_00797403.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|108808068, gi... - gi\|108808068\|ref\|YP_651984.1\| colicin V production protein [Yersinia pestis Antiqua], gi\|108779981\|g... gi\|229688455, gi... - gi\|229898907\|ref\|ZP_04514052.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|25299155 - pir\|\|AC0338 probable colicin V production protein cvpA [imported] - Yersinia pestis (strain CO92) gi\|153950398, gi... - gi\|77629661\|ref\|ZP_00792247.1\| COG1286: Uncharacterized membrane protein, required for colicin V pro... gi\|229902693, gi... - gi\|229902693\|ref\|ZP_04517810.1\| membrane protein required for colicin V production [Yersinia pestis ... gi\|45437046, gi\|... - gi\|45442182\|ref\|NP_993721.1\| colicin V production protein [Yersinia pestis biovar Microtus str. 9100... gi\|21958395, gi\|... - gi\|22125499\|ref\|NP_668922.1\| colicin V production protein [Yersinia pestis KIM], gi\|21958395\|gb\|AAM8... gi\|115348454, gi... - gi\|218929843\|ref\|YP_002347718.1\| colicin V production protein [Yersinia pestis CO92], gi\|16122975\|re... Q668X4\|Q668X4_YERPS - Putative colicin V production protein - Yersinia pseudotuberculosis gi\|51596932, gi\|... - gi\|51596932\|ref\|YP_071123.1\| colicin V production protein [Yersinia pseudotuberculosis IP 32953], gi... gi\|186896013, gi... - gi\|186896013\|ref\|YP_001873125.1\| colicin V production protein [Yersinia pseudotuberculosis PB1/+], g... gi\|149365245, gi... - gi\|149365245\|ref\|ZP_01887280.1\| putative colicin V production protein [Yersinia pestis CA88-4125], g... gi\|145210964, gi... - gi\|145599268\|ref\|YP_001163344.1\| colicin V production protein [Yersinia pestis Pestoides F], gi\|1452...	3.0E-31	[1..160]	[1..160]
gi\|52307109, gi\|... - gi\|52425057\|ref\|YP_088194.1\| CvpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52307109\|gb\|AA...	2.0E-30	[19..162]	[17..160]
gi\|85059592, gi\|... - gi\|85059592\|ref\|YP_455294.1\| colicin V production protein [Sodalis glossinidius str. 'morsitans'], g...	2.0E-30	[1..161]	[1..161]
gi\|28898960, gi\|... - gi\|28898960\|ref\|NP_798565.1\| bacteriocin production protein [Vibrio parahaemolyticus RIMD 2210633], ... gi\|28807179 - gi\|28807179\|dbj\|BAC60449.1\| bacteriocin production protein [Vibrio parahaemolyticus RIMD 2210633]	5.0E-30	[1..162]	[1..162]
gi\|218321925, gi... - gi\|218708906\|ref\|YP_002416527.1\| Bacteriocin production protein [Vibrio splendidus LGP32], gi\|218321... gi\|85833858, gi\|... - gi\|86148375\|ref\|ZP_01066668.1\| Bacteriocin production protein [Vibrio sp. MED222], gi\|85833858\|gb\|EA...	8.0E-30	[1..161]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWIDYAIIA VIAFSCLVSL IRGFVREALS LVTWGCAFFV ASHYYTYLSV WFTGFEDELV  60
   61 RNGIAIAVLF IATLIVGAIV NFVIGQLVEK TGLSGTDRVL GICFGALRGA LIVAAILFFL 120
  121 DTFTGLSKSE DWSKSQLIPQ FSFIIRWFFD YLQSSSSFLP RT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.356547
Match:	PF02674.7
Description:	No description for PF02674.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits