YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204320005, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204320005, gi....

Description	E-value	Query Range	Subject Range
gi\|197362042, gi... - gi\|197362042\|ref\|YP_002141679.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica s... gi\|56413116, gi\|... - gi\|56413116\|ref\|YP_150191.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica serov...	1.0E-46	[1..235]	[1..235]
FLIH_SALTY - Flagellar assembly protein fliH OS=Salmonella typhimurium GN=fliH PE=3 SV=2 gi\|205328418, gi... - gi\|205328418\|gb\|EDZ15182.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser... gi\|62128179, gi\|... - gi\|62180546\|ref\|YP_216963.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica serov... FLIH_SALTY - Flagellar assembly protein fliH OS=Salmonella typhimurium GN=fliH PE=3 SV=2 gi\|224468057, gi... - gi\|224583530\|ref\|YP_002637328.1\| flagellar assembly protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=fliH] [protein=flagellar assembly protein H] [protein_id=YP_005237941.1] [location=2070607..20... gi\|194407917, gi... - gi\|194449613\|ref\|YP_002046022.1\| flagellar assembly protein H [Salmonella enterica subsp. enterica s... FLIH_SALTY - Flagellar assembly protein FliH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=f... gi\|205336390, gi... - gi\|205336390\|gb\|EDZ23154.1\| flagellar assembly protein FliH [Salmonella enterica subsp. enterica ser...	3.0E-46	[1..235]	[1..235]
gi\|157067091, gi... - gi\|75195995\|ref\|ZP_00706065.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [E...	6.0E-44	[1..235]	[1..228]
gi\|68556789, gi\|... - gi\|94314182\|ref\|YP_587391.1\| flagellar assembly protein H [Ralstonia metallidurans CH34], gi\|9335803...	6.0E-42	[2..233]	[54..270]
gi\|30041632, gi\|... - gi\|30063380\|ref\|NP_837551.1\| flagellar assembly protein H [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|56383557, gi\|... - gi\|56480006\|ref\|NP_707825.2\| flagellar assembly protein H [Shigella flexneri 2a str. 301], gi\|563835... gi\|110805910, gi... - gi\|110805910\|ref\|YP_689430.1\| flagellar assembly protein H [Shigella flexneri 5 str. 8401], gi\|11061...	2.0E-41	[1..235]	[1..228]
gi\|110642046, gi... - gi\|110642046\|ref\|YP_669776.1\| flagellar assembly protein H [Escherichia coli 536], gi\|110343638\|gb\|A... gi\|190906435, gi... - gi\|75239166\|ref\|ZP_00723143.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [E...	2.0E-41	[1..235]	[1..228]
gi\|26108613, gi\|... - gi\|26248209\|ref\|NP_754249.1\| flagellar assembly protein [Escherichia coli CFT073], gi\|26108613\|gb\|AA...	2.0E-41	[1..235]	[8..235]
EG11656 - negative regulator of FliI ATPase activity / Negative regulator of FliI ATPase activity; involved in... gi\|238861095, gi... - gi\|238901145\|ref\|YP_002926941.1\| flagellar biosynthesis protein [Escherichia coli BW2952], gi\|238861... FLIH_ECOLI - Flagellar assembly protein fliH - Escherichia coli gi\|253324155, gi... - gi\|253773111\|ref\|YP_003035942.1\| flagellar assembly protein FliH [Escherichia coli BL21(DE3)], gi\|25... EG11656 - negative regulator of FliI ATPase activity / Negative regulator of FliI ATPase activity; involved in... gi\|1736606, gi\|8... - gi\|89108772\|ref\|AP_002552.1\| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. W311... gi\|169889419, gi... - gi\|170081584\|ref\|YP_001730904.1\| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. ...	3.0E-41	[1..235]	[1..228]
gi\|83585025, gi\|... - gi\|83585025\|ref\|ZP_00923679.1\| COG1317: Flagellar biosynthesis/type III secretory pathway protein [E... gi\|218705433, gi... - gi\|218705433\|ref\|YP_002412952.1\| flagellar assembly protein H [Escherichia coli UMN026], gi\|21843253... gi\|161986517 - gi\|161986517\|ref\|YP_310899.2\| flagellar assembly protein H [Shigella sonnei Ss046]	3.0E-41	[1..235]	[1..228]
Q66BR9\|Q66BR9_YERPS - Flagellar assembly protein FliH - Yersinia pseudotuberculosis gi\|169751152, gi... - gi\|170024618\|ref\|YP_001721123.1\| flagellar assembly protein H [Yersinia pseudotuberculosis YPIII], g... gi\|51589319, gi\|... - gi\|51596037\|ref\|YP_070228.1\| flagellar assembly protein H [Yersinia pseudotuberculosis IP 32953], gi...	3.0E-41	[3..235]	[6..238]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNELPWQVW TPDDLAPPPE TFVPVEADNV TLTDDTPEPE LTAEQQLEQE LAQLKIQAHE  60
   61 QGYNAGLAEG RQKGHAQGYQ EGLAQGLEQG QAQAQTQQAP IHARMQQLVS EFQNTLDALD 120
  121 SVIASRLMQM ALEAARQVIG QTPAVDNSAL IKQIQQLLQQ EPLFSGKPQL RVHPDDLQRV 180
  181 EEMLGATLSL HGWRLRGDPT LHHGGCKVSA DEGDLDASVA TRWQELCRLA APGVL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits