YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213422336
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E01-6750
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213422336.

Description	E-value	Query Range	Subject Range
gi\|115364038, gi... - gi\|115378962\|ref\|ZP_01466095.1\| 6-pyruvoyl tetrahydropterin synthase family [Stigmatella aurantiaca ...	2.0E-44	[4..120]	[657..773]
gi\|85058493, gi\|... - gi\|85058493\|ref\|YP_454195.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Sodalis glossinidius ...	4.0E-43	[1..120]	[1..120]
gi\|110616159, gi... - gi\|110806611\|ref\|YP_690131.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 5 ... gi\|254037814, gi... - gi\|254037814\|ref\|ZP_04871872.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683943... gi\|24053178, gi\|... - ref\|NP_708563.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a str. 301], ...	1.0E-42	[1..120]	[30..149]
gi\|26109570, gi\|... - gi\|26249163\|ref\|NP_755203.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli CFT0... gi\|91073700, gi\|... - gi\|91212126\|ref\|YP_542112.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli UTI8... gi\|237706612, gi... - gi\|237706612\|ref\|ZP_04537093.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	1.0E-42	[1..120]	[30..149]
gi\|9948737, gi\|1... - gi\|9948737\|gb\|AAG06054.1\|AE004695_7 probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas ae... gi\|152989185, gi... - gi\|94412899\|ref\|ZP_01292797.1\| hypothetical protein PaerP_01005313 [Pseudomonas aeruginosa PA7], gi\|... gi\|107102187 - gi\|107102187\|ref\|ZP_01366105.1\| hypothetical protein PaerPA_01003238 [Pseudomonas aeruginosa PACS2] gi\|11350848 - pir\|\|H83311 probable 6-pyruvoyl tetrahydrobiopterin synthase PA2666 [imported] - Pseudomonas aerugin... gi\|116050653, gi... - gi\|32037704\|ref\|ZP_00135976.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|194546633, gi... - gi\|84320636\|ref\|ZP_00969009.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa... gi\|218771397, gi... - gi\|218891172\|ref\|YP_002440038.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aerug... gi\|84326995, gi\|... - gi\|84326995\|ref\|ZP_00975019.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Pseudomonas aeruginosa...	1.0E-42	[3..120]	[1..118]
gi\|121586547, gi... - gi\|121586547\|ref\|ZP_01676333.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 2... gi\|124116688, gi... - gi\|153212310\|ref\|ZP_01948098.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae 1... gi\|153222955, gi... - gi\|153222955\|ref\|ZP_01953562.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|153820104, gi... - gi\|153820104\|ref\|ZP_01972771.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae N... gi\|153823525, gi... - gi\|229511215\|ref\|ZP_04400694.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae B33], gi\|2293511... gi\|125617912, gi... - gi\|75829229\|ref\|ZP_00758540.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae MO10],... gi\|197751937, gi... - gi\|254286604\|ref\|ZP_04961560.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae A... gi\|147674632, gi... - gi\|75826689\|ref\|ZP_00756124.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae O395],... gi\|148874477, gi... - gi\|153830037\|ref\|ZP_01982704.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae 62... gi\|254226643, gi... - gi\|75817726\|ref\|ZP_00748032.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V51], ... gi\|149739600, gi... - gi\|153826588\|ref\|ZP_01979255.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae M... gi\|75814393, gi\|... - gi\|75814393\|ref\|ZP_00744988.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Vibrio cholerae V52], ... gi\|227009358, gi... - gi\|227081470\|ref\|YP_002810021.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Vibrio cholerae M... gi\|229357338, gi... - gi\|229505115\|ref\|ZP_04394625.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae BX 330286], gi\|2... gi\|229515675, gi... - gi\|229515675\|ref\|ZP_04405134.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae TMA 21], gi\|2293... gi\|229518333, gi... - gi\|229518333\|ref\|ZP_04407777.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae RC9], gi\|2293450... gi\|229529619, gi... - gi\|229529619\|ref\|ZP_04419009.1\| queuosine biosynthesis QueD PTPS-I [Vibrio cholerae 12129(1)], gi\|22... gi\|9655787, gi\|1... - gi\|9655787\|gb\|AAF94458.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Vibrio cholerae O1 biov... gi\|11279793 - pir\|\|G82217 probable 6-pyruvoyl tetrahydrobiopterin synthase VC1299 [imported] - Vibrio cholerae (st...	2.0E-42	[1..120]	[3..122]
gi\|71557763, gi\|... - gi\|71737210\|ref\|YP_275300.1\| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas syringae...	4.0E-42	[3..120]	[1..118]
gi\|193063686, gi... - gi\|75258377\|ref\|ZP_00729808.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E22],...	5.0E-42	[1..120]	[1..120]
gi\|170519903, gi... - gi\|170682185\|ref\|YP_001744918.1\| queuosine biosynthesis protein QueD [Escherichia coli SMS-3-5], gi\|... gi\|188015773, gi... - gi\|188024939\|ref\|ZP_02997304.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. E... gi\|189372211, gi... - gi\|189372211\|gb\|EDU90627.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC869... gi\|189377514, gi... - gi\|189377514\|gb\|EDU95930.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC508... gi\|168774699, gi... - gi\|187769665\|gb\|EDU33509.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC419... gi\|189003378, gi... - gi\|189003378\|gb\|EDU72364.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC407... gi\|56480179, gi\|... - gi\|56480179\|ref\|NP_708563.2\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a ... gi\|189366916, gi... - gi\|189366916\|gb\|EDU85332.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC450... gi\|189362073, gi... - gi\|189362073\|gb\|EDU80492.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC448... gi\|168755513, gi... - gi\|189357368\|gb\|EDU75787.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. EC440... tr\|A0A0X8UL94\|A0... - 6-carboxytetrahydropterin synthase QueD OS=Escherichia coli (strain K12) GN=C3026_15195 PE=4 SV=1 gi\|30064114, gi\|... - gi\|30064114\|ref\|NP_838285.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a ... gi\|209920212, gi... - gi\|209920212\|ref\|YP_002294296.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli ... gi\|217319467, gi... - gi\|217327100\|ref\|ZP_03443183.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. T... gi\|208739884, gi... - gi\|208819761\|ref\|ZP_03260081.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. E... gi\|209396419, gi... - gi\|209396419\|ref\|YP_002272230.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. ... gi\|208728155, gi... - gi\|208808354\|ref\|ZP_03250691.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. E... gi\|208812280, gi... - gi\|208812280\|ref\|ZP_03253609.1\| queuosine biosynthesis protein QueD [Escherichia coli O157:H7 str. E... gi\|194422063, gi... - gi\|194438942\|ref\|ZP_03071026.1\| queuosine biosynthesis protein QueD [Escherichia coli 101-1], gi\|194... gi\|195939479 - gi\|195939479\|ref\|ZP_03084861.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli O... gi\|192956991, gi... - gi\|193069628\|ref\|ZP_03050580.1\| queuosine biosynthesis protein QueD [Escherichia coli E110019], gi\|1... gi\|194427920, gi... - gi\|194427920\|ref\|ZP_03060466.1\| queuosine biosynthesis protein QueD [Escherichia coli B171], gi\|1944... gi\|191166821, gi... - gi\|191166821\|ref\|ZP_03028647.1\| queuosine biosynthesis protein QueD [Escherichia coli B7A], gi\|19090... gi\|193065033, gi... - gi\|193065033\|ref\|ZP_03046108.1\| queuosine biosynthesis protein QueD [Escherichia coli E22], gi\|19292...	7.0E-42	[1..120]	[1..120]
gi\|74313335, gi\|... - gi\|74313335\|ref\|YP_311754.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella sonnei Ss046... gi\|81246478, gi\|... - gi\|82545067\|ref\|YP_409014.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella boydii Sb227... gi\|75256972 - gi\|75256972\|ref\|ZP_00728548.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E22] gi\|75512328, gi\|... - gi\|75512328\|ref\|ZP_00734880.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli 53638... gi\|89109552, gi\|... - gi\|89109552\|ref\|AP_003332.1\| 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli str. K-12 sub... EG13120 - 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) / 6-carboxy-5,6,7,8-tetrahydropterin synthase; queuos... gi\|75176372, gi\|... - gi\|75176372\|ref\|ZP_00696516.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Shigella boydii BS512]... EG13120 - 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) / 6-carboxy-5,6,7,8-tetrahydropterin synthase; queuos... gi\|75187493, gi\|... - gi\|75187493\|ref\|ZP_00700760.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E2437... gi\|12517226, gi\|... - gi\|15803283\|ref\|NP_289315.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli O157... gi\|83585583 - gi\|83585583\|ref\|ZP_00924226.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli 101-1... gi\|75230024 - gi\|75230024\|ref\|ZP_00716534.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli B7A] gi\|75235634 - gi\|75235634\|ref\|ZP_00719808.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli E1100... gi\|157162215, gi... - gi\|75196736\|ref\|ZP_00706806.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli HS], ... gi\|124498523, gi... - gi\|124531509\|ref\|ZP_01701763.1\| putative 6-pyruvoyl tetrahydropterin synthase [Escherichia coli B], ... gi\|75210975 - gi\|75210975\|ref\|ZP_00711099.1\| COG0720: 6-pyruvoyl-tetrahydropterin synthase [Escherichia coli B171] QUED_SHIFL - 6-carboxy-5,6,7,8-tetrahydropterin synthase OS=Shigella flexneri GN=queD PE=3 SV=1 gi\|218547715, gi... - gi\|218547715\|ref\|YP_002381506.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia ferguso... gi\|13363091, gi\|... - gi\|15832874\|ref\|NP_311647.1\| putative 6-pyruvoyl tetrahydrobiopterin synthase [Escherichia coli O157... gi\|169890174, gi... - gi\|170082339\|ref\|YP_001731659.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli st... gi\|238901902, gi... - gi\|238901902\|ref\|YP_002927698.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli BW... gi\|218353096, gi... - gi\|218696364\|ref\|YP_002404031.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli 55... gi\|242378313, gi... - gi\|251786040\|ref\|YP_003000344.1\| hypothetical protein B21_02573 [Escherichia coli BL21], gi\|24237831... gi\|218362081, gi... - gi\|218555313\|ref\|YP_002388226.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli IA... gi\|254289450, gi... - gi\|254289450\|ref\|YP_003055198.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli BL... gi\|253974592, gi... - gi\|254162691\|ref\|YP_003045799.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli B ... gi\|254594106, gi... - gi\|254794706\|ref\|YP_003079543.1\| 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Escherichia coli O1... QUED_ECO57 - 6-carboxy-5,6,7,8-tetrahydropterin synthase OS=Escherichia coli O157:H7 GN=queD PE=3 SV=1 PTPS_ECOLI - Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12) (PTPS) (PTP synthase) - Escherichia c... gi\|170018989, gi... - gi\|170018989\|ref\|YP_001723943.1\| 6-pyruvoyl tetrahydropterin synthase [Escherichia coli ATCC 8739], ...	7.0E-42	[1..120]	[2..121]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTLYKDFT FEAAHRLPHV PEGHKCGRLH GHSFMVRLEI TGEVDPHTGW IMDFADLKAA  60
   61 FKPTYDRLDH YYLNDIPGLS NPTSEVLAKW IWDQVKPVVP LLSAVMVKET CTAGCVYRGE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2obaA
Description:	No description for 2obaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits