YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PRX2A_ARATH
Organism: Arabidopsis thaliana
Length: 553 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRX2A_ARATH.

Description E-value Query
Range
Subject
Range
FB323_ARATH - F-box protein At2g38590 OS=Arabidopsis thaliana GN=At2g38590 PE=2 SV=1
265.0 [0..155] [552..1]

Back

Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIDVGDFV PDGSISFFDD DDQLQTVSVH SLAAGKKVIL FGVPGAFPPT CSMNHVNGFI  60
   61 EKAEELKSNG VDEIICLSGD DPFMITACSE NKHVKFVEDG SGEYIQLLGL ELEVKDKGLG 120
  121 VRSRGFALLL DNLKVIVVNV GSGGDCSLFQ L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.09691
Match: 1tp9A
Description: PRX D (type II) from Populus tremula
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [152-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTTTTMSN LPTDLLEEII SRVPRKYMRA VRLTCKRWNG MFKSQSFTKM HIGKEEAATR  60
   61 ELRQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.62
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #3
Region A:
Residues: [216-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRMIVMMDYN VYLMGIAVNE IPSIETLGKL TCLDDSEQVK ISQVFCCEGL LLCILKDDDT  60
   61 KIVVWNPYLG QTRWIQTRLI CCVSGWKKYA LGYGNNSENR SCRSPKILRV TDNFNIFSEN 120
  121 IPLQYEIYDF DSDVWTTLDV SPHWFIMSER GLSLKGNTYW GAKERHAYGS IDHIICFDFT 180
  181 RERFGPLLPL PFSAWGAQFA SLSSVREDKI TALFQNCRAY KLELWITTKI DVNNATWSKF 240
  241 FTMDTPYLHE IL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1u6dX
Description: Crystal structure of the Kelch domain of human Keap1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [468-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLKTFFIDEE NKIVVVSNKE RDTKGDLTHD SIDIINGEAR CLWKLGLGKP ADKNCWPLVC  60
   61 PYVPSVVQIK QHKGGKTKEQ SDYKRH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.060481
Match: PF07734.4
Description: No description for PF07734.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle