YRC Public Data Repository - Protein Structure Prediction

Protein:	SSRP_CAUCN
Organism:	Caulobacter crescentus NA1000
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSRP_CAUCN.

Description	E-value	Query Range	Subject Range
gi\|85690505, gi\|... - gi\|85708971\|ref\|ZP_01040037.1\| SsrA-binding protein [Erythrobacter sp. NAP1], gi\|85690505\|gb\|EAQ3050...	237.0	[0..3]	[147..37]
SSRP_SYMTH - SsrA-binding protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=smpB PE=3 SV=1 SSRP_SYMTH - SsrA-binding protein OS=Symbiobacterium thermophilum GN=smpB PE=3 SV=1	234.0	[0..4]	[152..10]
SSRP_BACCN - SsrA-binding protein OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) G...	234.0	[0..3]	[151..7]
gi\|3211758 - gi\|3211758\|gb\|AAC23745.1\| VacB homolog [Streptococcus pneumoniae]	233.0	[0..3]	[147..7]
gi\|206745151, gi... - gi\|206976665\|ref\|ZP_03237570.1\| SsrA-binding protein [Bacillus cereus H3081.97], gi\|206745151\|gb\|EDZ... SSRP_BACCQ - SsrA-binding protein OS=Bacillus cereus (strain Q1) GN=smpB PE=3 SV=1 SSRP_BACC7 - SsrA-binding protein OS=Bacillus cereus (strain AH187) GN=smpB PE=3 SV=1 SSRP_BACC1 - SsrA-binding protein OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=smpB PE=3 SV=1 gi\|228583617, gi... - gi\|229199857\|ref\|ZP_04326449.1\| hypothetical protein bcere0001_52990 [Bacillus cereus m1293], gi\|228... gi\|229141850, gi... - gi\|229141850\|ref\|ZP_04270377.1\| hypothetical protein bcere0013_49380 [Bacillus cereus BDRD-ST26], gi...	232.0	[0..3]	[151..7]
SSRP_GEOKA - SsrA-binding protein OS=Geobacillus kaustophilus (strain HTA426) GN=smpB PE=3 SV=1 gi\|221087388, gi... - gi\|221087388\|ref\|ZP_03556926.1\| SsrA-binding protein [Geobacillus sp. Y412MC61], gi\|220708637\|gb\|EED... SSRP_GEOKA - SsrA-binding protein OS=Geobacillus kaustophilus GN=smpB PE=3 SV=1 gi\|229500127, gi... - gi\|229500127\|ref\|ZP_04393799.1\| SsrA-binding protein [Geobacillus sp. Y412MC52], gi\|229328961\|gb\|EEN...	232.0	[0..3]	[151..7]
gi\|15644629 - gi\|15644629\|ref\|NP_228068.1\| SsrA-binding protein [Thermotoga maritima MSB8]	232.0	[0..1]	[150..9]
gi\|56964766, gi\|... - gi\|56964766\|ref\|YP_176497.1\| SsrA-binding protein [Bacillus clausii KSM-K16], gi\|56911009\|dbj\|BAD655...	232.0	[0..3]	[149..13]
gi\|10176176, gi\|... - gi\|15616114\|ref\|NP_244419.1\| SsrA-binding protein [Bacillus halodurans C-125], gi\|10176176\|dbj\|BAB07... gi\|25317451 - gi\|25317451\|pir\|\|H84093 small protein B BH3552 [imported] - Bacillus halodurans (strain C-125)	232.0	[0..3]	[147..10]
SSRP_CAUSK - SsrA-binding protein OS=Caulobacter sp. (strain K31) GN=smpB PE=3 SV=1	231.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPIAENRR ARFDYFIEET FEAGIMLTGT EVKSLRTGRA NIAESYASVE GREIVLINAD  60
   61 IPPYGHANRF NHEPRRHRKL LLHRRQIDKL IGAVQREGRT LVPIKLYWND KGLAKLEVGL 120
  121 AKGKKLHDKR DTAAERDWQR DKARLMKGDR GD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1j1hA
Description:	Small protein B (SmpB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	3.32492468545684	bayes_pls_golite062009
binding	2.51918663753466	bayes_pls_golite062009
RNA binding	2.15601096339293	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: