YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213969740, gi...
Organism:	Pseudomonas syringae pv. tomato T1
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213969740, gi....

Description	E-value	Query Range	Subject Range
gi\|95109614 - gi\|95109614\|emb\|CAK14315.1\| cell division topological specificity factor MinE [Pseudomonas entomophi... MINE_PSEE4 - Cell division topological specificity factor OS=Pseudomonas entomophila (strain L48) GN=minE PE=3 SV...	136.0	[0..1]	[84..1]
MINE_PSEPF - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf0-1) GN=minE PE=3 ...	133.0	[0..1]	[84..1]
gi\|49082426 - gi\|49082426\|gb\|AAT50613.1\| PA3245 [synthetic construct]	133.0	[0..1]	[84..1]
tr\|I7B9M4\|I7B9M4... - Cell division topological specificity factor OS=Pseudomonas putida (strain DOT-T1E) GN=minE PE=3 SV=... MINE_PSEP1 - Cell division topological specificity factor OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=minE... MINE_PSEPK - Cell division topological specificity factor OS=Pseudomonas putida (strain KT2440) GN=minE PE=3 SV=1 tr\|E4REQ1\|E4REQ1... - Cell division topological specificity factor OS=Pseudomonas putida (strain BIRD-1) GN=minE PE=3 SV=1 MINE_PSEPG - Cell division topological specificity factor OS=Pseudomonas putida (strain GB-1) GN=minE PE=3 SV=1	133.0	[0..1]	[84..1]
MINE_PSEU2 - Cell division topological specificity factor OS=Pseudomonas syringae pv. syringae (strain B728a) GN=... tr\|F3GDU4\|F3GDU4... - Cell division topological specificity factor OS=Pseudomonas syringae pv. pisi str. 1704B GN=minE PE=...	132.0	[0..1]	[84..1]
MINE_PSEA7 - Cell division topological specificity factor OS=Pseudomonas aeruginosa (strain PA7) GN=minE PE=3 SV=... MINE_PSEAE - Cell division topological specificity factor OS=Pseudomonas aeruginosa GN=minE PE=3 SV=1 MINE_PSEAB - Cell division topological specificity factor OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=minE P... MINE_PSEA8 - Cell division topological specificity factor OS=Pseudomonas aeruginosa (strain LESB58) GN=minE PE=3 ... gi\|194547191, gi... - gi\|254236206\|ref\|ZP_04929529.1\| cell division topological specificity factor MinE [Pseudomonas aerug... gi\|84326153, gi\|... - gi\|84326153\|ref\|ZP_00974183.1\| COG0851: Septum formation topological specificity factor [Pseudomonas... MINE_PSEAE - Cell division topological specificity factor OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1...	132.0	[0..1]	[84..1]
MINE_PSEF5 - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)...	131.0	[0..1]	[84..1]
gi\|67155138, gi\|... - gi\|67155138\|ref\|ZP_00416766.1\| Septum formation topological specificity factor MinE [Azotobacter vin... MINE_AZOVD - Cell division topological specificity factor OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) G...	129.0	[0..1]	[84..1]
gi\|86163238, gi\|... - gi\|87121395\|ref\|ZP_01077284.1\| cell division topological specificity factor MinE [Marinomonas sp. ME...	128.0	[0..1]	[84..1]
MINE_HAHCH - Cell division topological specificity factor OS=Hahella chejuensis (strain KCTC 2396) GN=minE PE=3 S...	124.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFDFFRDR KKESTASVAK ERLQIIVAHE RGQRSTPDYL PALQKELVEV IRKYVNIESD  60
   61 QVQVALESQG SCSILELNIT LPDR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.142668
Match:	PF03776.5
Description:	No description for PF03776.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits