YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194737375, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194737375, gi....

Description	E-value	Query Range	Subject Range
gi\|23125156, gi\|... - gi\|23125156\|ref\|ZP_00107102.1\| COG2091: Phosphopantetheinyl transferase [Nostoc punctiforme PCC 7310...	8.0E-43	[5..189]	[36..228]
gi\|205330762, gi... - gi\|205330762\|gb\|EDZ17526.1\| 4'-phosphopantetheinyl transferase AcpT [Salmonella enterica subsp. ente... gi\|205350268, gi... - gi\|205350268\|gb\|EDZ36899.1\| 4'-phosphopantetheinyl transferase AcpT [Salmonella enterica subsp. ente... ACPT_SALTY - 4'-phosphopantetheinyl transferase AcpT OS=Salmonella typhimurium GN=acpT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=acpT] [protein=holo-(acyl carrier protein) synthase 2] [protein_id=YP_005239795.1] [location=3... ACPT_SALTY - 4'-phosphopantetheinyl transferase acpT OS=Salmonella typhimurium GN=acpT PE=3 SV=1 ACPT_SALTY - 4'-phosphopantetheinyl transferase AcpT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007...	2.0E-41	[1..192]	[1..192]
HETI_NOSS1 - 4'-phosphopantetheinyl transferase HetI OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetI PE=3 SV=... gi\|1075638 - pir\|\|E55210 hetI protein - Anabaena sp. (strain PCC 7120)	5.0E-41	[3..189]	[32..226]
gi\|56129739, gi\|... - gi\|56415482\|ref\|YP_152557.1\| holo-(acyl carrier protein) synthase 2 [Salmonella enterica subsp. ente... gi\|197095887, gi... - gi\|197364410\|ref\|YP_002144047.1\| holo-(acyl carrier protein) synthase 2 [Salmonella enterica subsp. ...	5.0E-41	[1..192]	[1..192]
gi\|62129715, gi\|... - gi\|62182082\|ref\|YP_218499.1\| holo-(acyl carrier protein) synthase 2 [Salmonella enterica subsp. ente...	6.0E-41	[1..192]	[1..192]
gi\|71670879, gi\|... - gi\|71676018\|ref\|ZP_00673761.1\| Phosphopantethiene-protein transferase [Trichodesmium erythraeum IMS1...	9.0E-41	[3..190]	[29..228]
gi\|53765500, gi\|... - gi\|75908811\|ref\|YP_323107.1\| 4'-phosphopantetheinyl transferase [Anabaena variabilis ATCC 29413], gi...	1.0E-40	[3..189]	[32..226]
gi\|58202740 - gi\|58202740\|gb\|AAW67221.1\| putative phosphopantetheinyl transferase [Nodularia spumigena NSOR10] gi\|65994097 - gi\|65994097\|gb\|AAY42632.1\| NhcS [Nodularia spumigena]	1.0E-39	[8..188]	[39..227]
gi\|24114735, gi\|... - gi\|24114735\|ref\|NP_709245.1\| holo-(acyl carrier protein) synthase 2 [Shigella flexneri 2a str. 301],... gi\|30043510, gi\|... - gi\|30065248\|ref\|NP_839419.1\| holo-(acyl carrier protein) synthase 2 [Shigella flexneri 2a str. 2457T...	4.0E-39	[1..188]	[1..188]
gi\|82778741, gi\|... - gi\|82778741\|ref\|YP_405090.1\| holo-(acyl carrier protein) synthase 2 [Shigella dysenteriae Sd197], gi...	1.0E-38	[1..188]	[1..188]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQIVLGKVS TLSAGQLPDA LIAQAPQGVR RASWLAGRVL LSRALSPLPE MVYGEQGKPA  60
   61 FSAGTPLWFN LSHSGDTIAL LLSDEGEVGC DIEVIRPRDN WRSLANAVFS LGEHAEMEAE 120
  121 RPERQLAAFW RIWTRKEAIV KQRGGSAWQI VSVDSTLPSA LSVSQCQLDT LSLAVCTPTP 180
  181 FTLTPQTITK AL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.154902
Match:	1qr0A
Description:	4'-Phosphopantetheinyl transferase SFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.953339213172222	bayes_pls_golite062009
transferase activity	0.17804298348743	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0354356597199104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: