YRC Public Data Repository - Protein Structure Prediction

Protein:	COX5C_ORYSJ
Organism:	Oryza sativa Japonica Group
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5C_ORYSJ.

Description	E-value	Query Range	Subject Range
gi\|357161933\|ref... - PREDICTED: cytochrome c oxidase subunit 5C-like [Brachypodium distachyon], PREDICTED: cytochrome c o... COX5C_HORVU - Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3 gi\|1070356 - gi\|1070356\|emb\|CAA92107.1\| cytochrome c oxidase, Vc subunit [Hordeum vulgare subsp. vulgare]	112.0	[0..1]	[63..1]
CX5C2_ARATH - Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1	111.0	[0..1]	[63..1]
CX5C2_HELAN - Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1	111.0	[0..1]	[63..1]
COX5C_IPOBA - Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3	108.0	[0..1]	[63..1]
gi\|4105786 - gi\|4105786\|gb\|AAD02550.1\| PGPS/D8 [Petunia x hybrida]	98.0	[0..3]	[63..2]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGRIAHAT LKGPSVVKEI CIGLTLGLVA GGLWKMHHWN EQRKTRSFYD MLEKGQISVV  60
   61 VEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.221849
Match:	PF05799.3
Description:	No description for PF05799.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits