YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165917470, gi...
Organism:	Coxiella burnetii RSA 334
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165917470, gi....

Description	E-value	Query Range	Subject Range
RL27_LEGPA - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Paris) GN=rpmA PE=3 SV=1 RL27_LEGPL - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Lens) GN=rpmA PE=3 SV=1 RL27_LEGPH - 50S ribosomal protein L27 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC... RL27_LEGPC - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Corby) GN=rpmA PE=3 SV=1	145.0	[0..1]	[84..1]
gi\|154707007, gi... - gi\|94491108\|ref\|ZP_01298327.1\| hypothetical protein CburD_01001839 [Coxiella burnetii Dugway 7E9-12]... RL27_COXBN - 50S ribosomal protein L27 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpmA PE=3 SV=1	145.0	[0..1]	[90..1]
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	145.0	[0..1]	[86..1]
gi\|62257455 - gi\|62257455\|gb\|AAX77717.1\| unknown protein [synthetic construct]	145.0	[0..1]	[82..27]
RL27_DECAR - 50S ribosomal protein L27 OS=Dechloromonas aromatica (strain RCB) GN=rpmA PE=3 SV=1	144.0	[0..1]	[87..1]
gi\|38347665, gi\|... - gi\|50922941\|ref\|XP_471831.1\| OSJNBa0041M06.7 [Oryza sativa (japonica cultivar-group)], gi\|38347665\|e... gi\|125561484 - gi\|125561484\|gb\|EAZ06932.1\| hypothetical protein OsI_028164 [Oryza sativa (indica cultivar-group)]	144.0	[0..2]	[86..40]
gi\|238793007, gi... - gi\|77977595\|ref\|ZP_00833039.1\| COG0211: Ribosomal protein L27 [Yersinia intermedia ATCC 29909], gi\|2...	144.0	[0..1]	[82..1]
gi\|238718564, gi... - gi\|77961854\|ref\|ZP_00825683.1\| COG0211: Ribosomal protein L27 [Yersinia mollaretii ATCC 43969], gi\|2...	143.0	[0..1]	[82..1]
gi\|238715585, gi... - gi\|77958776\|ref\|ZP_00822804.1\| COG0211: Ribosomal protein L27 [Yersinia bercovieri ATCC 43970], gi\|2...	143.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGST RNGRDSNPKM LGVKRFGGER VLAGNIIVRQ RGTHYRPGEN MGMGRDHTLY  60
   61 ALIEGKVKFT RKGPKKRNFV SIEPLEESQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.09691
Match:	1vs6W
Description:	No description for 1vs6W was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
peptidyltransferase activity	3.94173449567504	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.479709297593055	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: