YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405985
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405985.

Description	E-value	Query Range	Subject Range
YH10_YEAST - Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR210... YHR210C - Putative protein of unknown function; non-essential gene; highly expressed under anaeorbic condition... gi\|190405985 - gi\|190405985\|gb\|EDV09252.1\| hypothetical protein SCRG_04923 [Saccharomyces cerevisiae RM11-1a]	1.0E-91	[1..341]	[1..341]
gi\|15643051, gi\|... - gi\|4980780\|gb\|AAD35370.1\|AE001710_5 aldose 1-epimerase [Thermotoga maritima MSB8], gi\|15643051\|ref\|N... gi\|7445539 - pir\|\|H72395 probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga maritima (strain MSB8)	8.0E-88	[3..341]	[15..354]
gi\|15242223, gi\|... - gi\|91806860\|gb\|ABE66157.1\| aldose 1-epimerase family protein [Arabidopsis thaliana], gi\|7671483\|emb\|...	8.0E-86	[5..341]	[155..488]
GALM_PIG - Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1	6.0E-85	[8..341]	[17..341]
gi\|161614994, gi... - gi\|161614994\|ref\|YP_001588959.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Par... gi\|205324641, gi... - gi\|205324641\|gb\|EDZ12480.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Saintp... gi\|238913333 - gi\|238913333\|ref\|ZP_04657170.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Tenn... gi\|62126974, gi\|... - gi\|62179341\|ref\|YP_215758.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Cholera... gi\|205271813, gi... - gi\|205352032\|ref\|YP_002225833.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Gal... lcl\|NC_016856.1_... - [gene=galM] [protein=aldose 1-epimerase] [protein_id=YP_005236492.1] [location=complement(837679..83... gi\|197262342, gi... - gi\|197262342\|ref\|ZP_03162416.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Sa... gi\|199603460, gi... - gi\|200391015\|ref\|ZP_03217626.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Vi... gi\|194446021, gi... - gi\|194446021\|ref\|YP_002040009.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar N... gi\|194456599, gi... - gi\|194470235\|ref\|ZP_03076219.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Ke... gi\|16764137, gi\|... - gi\|16764137\|ref\|NP_459752.1\| aldose 1-epimerase [Salmonella typhimurium LT2], gi\|16419278\|gb\|AAL1971... gi\|168263735, gi... - gi\|205347833\|gb\|EDZ34464.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Hadar ... gi\|168466357, gi... - gi\|195630990\|gb\|EDX49576.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Newpor... gi\|167994419, gi... - gi\|205327694\|gb\|EDZ14458.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|168230655, gi... - gi\|205334814\|gb\|EDZ21578.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Kentuc...	6.0E-85	[4..339]	[9..343]
gi\|213582687 - gi\|213582687\|ref\|ZP_03364513.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|213427698 - gi\|213427698\|ref\|ZP_03360448.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|214001891 - gi\|214001891\|ref\|ZP_03412626.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|213854587 - gi\|213854587\|ref\|ZP_03382827.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|16759698 - gi\|16759698\|ref\|NP_455315.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16501991, gi\|... - gi\|25307144\|pir\|\|AC0594 aldose 1-epimerase (mutarotase) [imported] - Salmonella enterica subsp. ente... gi\|29142529, gi\|... - gi\|29142529\|ref\|NP_805871.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhi s...	2.0E-84	[4..339]	[9..343]
gi\|15602899, gi\|... - gi\|15602899\|ref\|NP_245971.1\| aldose 1-epimerase [Pasteurella multocida subsp. multocida str. Pm70], ...	2.0E-84	[4..340]	[10..342]
gi\|21220860, gi\|... - gi\|6562794\|emb\|CAB62725.1\| putative aldose 1-epimerase [Streptomyces coelicolor A3(2)], gi\|21220860\|...	5.0E-84	[6..341]	[10..322]
gi\|75511358, gi\|... - gi\|75511358\|ref\|ZP_00734043.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 5... gi\|124531873, gi... - gi\|124531873\|ref\|ZP_01701972.1\| galactose mutarotase [Escherichia coli B], gi\|124498294\|gb\|EAY45812.... gi\|170020906, gi... - gi\|170020906\|ref\|YP_001725860.1\| aldose 1-epimerase [Escherichia coli ATCC 8739], gi\|169755834\|gb\|AC... GALM_ECOLI - Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase) - Escherichia coli gi\|81244587, gi\|... - gi\|82543176\|ref\|YP_407123.1\| aldose 1-epimerase [Shigella boydii Sb227], gi\|81244587\|gb\|ABB65295.1\| ... gi\|170681719, gi... - gi\|170681719\|ref\|YP_001742859.1\| galactose mutarotase [Escherichia coli SMS-3-5], gi\|170519437\|gb\|AC... gi\|170080416, gi... - gi\|170080416\|ref\|YP_001729736.1\| galactose-1-epimerase (mutarotase) [Escherichia coli str. K-12 subs... gi\|218360044, gi... - gi\|218553276\|ref\|YP_002386189.1\| aldose 1-epimerase [Escherichia coli IAI1], gi\|218360044\|emb\|CAQ975... gi\|89107607, gi\|... - gi\|89107607\|ref\|AP_001387.1\| galactose-1-epimerase [Escherichia coli str. K-12 substr. W3110], gi\|16... gi\|209918000, gi... - gi\|209918000\|ref\|YP_002292084.1\| aldose 1-epimerase [Escherichia coli SE11], gi\|209911259\|dbj\|BAG763... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|110804625, gi... - gi\|110804625\|ref\|YP_688145.1\| aldose 1-epimerase [Shigella flexneri 5 str. 8401], gi\|110614173\|gb\|AB... gi\|218694173, gi... - gi\|218694173\|ref\|YP_002401840.1\| aldose 1-epimerase [Escherichia coli 55989], gi\|218350905\|emb\|CAU96... gi\|194439766, gi... - gi\|83584859\|ref\|ZP_00923518.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 1... gi\|187733828, gi... - gi\|75175248\|ref\|ZP_00695558.1\| COG2017: Galactose mutarotase and related enzymes [Shigella boydii BS... gi\|157157316, gi... - gi\|75189770\|ref\|ZP_00703037.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|157065911, gi... - gi\|75194909\|ref\|ZP_00704979.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli H... gi\|194429691, gi... - gi\|75209075\|ref\|ZP_00709333.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75228377, gi\|... - gi\|75228377\|ref\|ZP_00715025.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75235773, gi\|... - gi\|75235773\|ref\|ZP_00719928.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|192926798, gi... - gi\|75256340\|ref\|ZP_00728010.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... GALM_SHIFL - Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 gi\|24050786, gi\|... - gi\|24111975\|ref\|NP_706485.1\| aldose 1-epimerase [Shigella flexneri 2a str. 301], gi\|24050786\|gb\|AAN4... gi\|30040332, gi\|... - gi\|30062088\|ref\|NP_836259.1\| aldose 1-epimerase [Shigella flexneri 2a str. 2457T], gi\|30040332\|gb\|AA... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|238900014, gi... - gi\|238900014\|ref\|YP_002925810.1\| galactose-1-epimerase (mutarotase) [Escherichia coli BW2952], gi\|23... gi\|253972720, gi... - gi\|254160819\|ref\|YP_003043927.1\| galactose-1-epimerase (mutarotase) [Escherichia coli B str. REL606]...	1.0E-83	[4..339]	[9..343]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNKAGGEY EVITIGDAKK LQATISELGA TLLDLKVNNE SIVLGYPDIH GYISDGYNYI  60
   61 GATVGRYANR IYKGMFSMED GPHQLTVNNC GNTNHSSISS FHLKKYKASK VQNPLDDLYI 120
  121 VEFTLLDDRT LPNEFPGDLA VNLKYTLNVA DMTLDLEYEA KLVSGEATPI NMTNHTYFNL 180
  181 NKTMDKKSIS GTEVRLCSDK SLEVSEGALI PTGKIVQRKI ATFDSSKPTI LQDDGPIYDY 240
  241 AFIVDENKNL KTTDSVSVNK LVPAFKAYHP ASRLSLEVST TEPTVLFYTG DNLCDGFTPR 300
  301 SGFAVEQGRY VDAINRDGWR DCVLLRRGEV YTSKTRYRFA V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	168.045757
Match:	1l7jA_
Description:	Galactose mutarotase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits