YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197287898, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197287898, gi....

Description	E-value	Query Range	Subject Range
gi\|84363249 - gi\|84363249\|ref\|ZP_00987845.1\| COG1792: Cell shape-determining protein [Burkholderia dolosa AUO158]	1.0E-43	[7..159]	[377..527]
gi\|37527916, gi\|... - gi\|37527916\|ref\|NP_931261.1\| rod shape-determining protein MreD [Photorhabdus luminescens subsp. lau...	2.0E-39	[2..163]	[1..162]
gi\|77973455 - gi\|77973455\|ref\|ZP_00829003.1\| COG2891: Cell shape-determining protein [Yersinia frederiksenii ATCC ...	3.0E-39	[2..163]	[1..162]
gi\|77958849 - gi\|77958849\|ref\|ZP_00822876.1\| COG2891: Cell shape-determining protein [Yersinia bercovieri ATCC 439...	6.0E-39	[2..163]	[1..162]
gi\|77978747 - gi\|77978747\|ref\|ZP_00834172.1\| COG2891: Cell shape-determining protein [Yersinia intermedia ATCC 299...	6.0E-39	[2..163]	[1..162]
gi\|229705758, gi... - gi\|229836815\|ref\|ZP_04456980.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... Q665F5\|Q665F5_YERPS - Rod shape-determining protein MreD - Yersinia pseudotuberculosis gi\|229695652, gi... - gi\|229839286\|ref\|ZP_04459445.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|149289031, gi... - gi\|153997394\|ref\|ZP_02022494.1\| rod shape-determining protein MreD [Yersinia pestis CA88-4125], gi\|1... gi\|229687341, gi... - gi\|229899849\|ref\|ZP_04514990.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|145209286, gi... - gi\|145597590\|ref\|YP_001161666.1\| rod shape-determining protein MreD [Yersinia pestis Pestoides F], g... gi\|166214159, gi... - gi\|166214159\|ref\|ZP_02240194.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|165989697, gi... - gi\|166011313\|ref\|ZP_02232211.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|25355497 - pir\|\|AE0446 rod shape-determining protein MreD [imported] - Yersinia pestis (strain CO92) gi\|166961366, gi... - gi\|167420560\|ref\|ZP_02312313.1\| rod shape-determining protein MreD [Yersinia pestis biovar Orientali... gi\|167402023, gi... - gi\|167402023\|ref\|ZP_02307506.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|45438478, gi\|... - gi\|45443608\|ref\|NP_995147.1\| rod shape-determining protein MreD [Yersinia pestis biovar Microtus str... gi\|167466829 - gi\|167466829\|ref\|ZP_02331533.1\| rod shape-determining protein MreD [Yersinia pestis FV-1] gi\|22124119, gi\|... - gi\|22124119\|ref\|NP_667542.1\| rod shape-determining protein MreD [Yersinia pestis KIM], gi\|21956872\|g... gi\|167055603, gi... - gi\|167425589\|ref\|ZP_02317342.1\| rod shape-determining protein MreD [Yersinia pestis biovar Mediaeval... gi\|115349289, gi... - gi\|218930678\|ref\|YP_002348553.1\| rod shape-determining protein MreD [Yersinia pestis CO92], gi\|16123... gi\|186700074, gi... - gi\|186897048\|ref\|YP_001874160.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis PB1... gi\|51597854, gi\|... - gi\|51597854\|ref\|YP_072045.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis IP 3295... gi\|170022718, gi... - gi\|170022718\|ref\|YP_001719223.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis YPI... gi\|165914620, gi... - gi\|89105387\|ref\|ZP_01177907.1\| COG2891: Cell shape-determining protein [Yersinia pestis biovar Orien... gi\|165927597, gi... - gi\|165927597\|ref\|ZP_02223429.1\| rod shape-determining protein MreD [Yersinia pestis biovar Orientali... gi\|108809671, gi... - gi\|108809671\|ref\|YP_653587.1\| rod shape-determining protein MreD [Yersinia pestis Antiqua], gi\|10878... gi\|229678278, gi... - gi\|229904160\|ref\|ZP_04519271.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|162351443, gi... - gi\|77634298\|ref\|ZP_00796401.1\| COG2891: Cell shape-determining protein [Yersinia pestis Angola], gi\|... gi\|77630564, gi\|... - gi\|77630564\|ref\|ZP_00793150.1\| COG2891: Cell shape-determining protein [Yersinia pseudotuberculosis ...	7.0E-39	[2..163]	[1..162]
gi\|50119229, gi\|... - gi\|50119229\|ref\|YP_048396.1\| rod shape-determining protein MreD [Pectobacterium atrosepticum SCRI104...	4.0E-38	[2..163]	[1..162]
gi\|62181880, gi\|... - gi\|62181880\|ref\|YP_218297.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...	2.0E-37	[1..163]	[1..163]
tr\|I7B6V9\|I7B6V9... - Rod shape-determining protein MreD OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5081 PE=4 SV=1 gi\|26987671, gi\|... - gi\|26987671\|ref\|NP_743096.1\| rod shape-determining protein MreD [Pseudomonas putida KT2440], gi\|2498... tr\|E4R5R8\|E4R5R8... - MreD OS=Pseudomonas putida (strain BIRD-1) GN=mreD PE=4 SV=1	8.0E-37	[1..162]	[1..162]
gi\|82735991, gi\|... - gi\|82735991\|ref\|ZP_00898852.1\| rod shape-determining protein MreD [Pseudomonas putida F1], gi\|827169...	2.0E-36	[2..162]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASYRSQGR WVIWLSFLIA LLLQIMPWPD DIIVFRPNWV LLILLYWILA LPHRVNVGTG  60
   61 FVMGAILDLI SGSTLGVRAL SMSIVAYLVA LKFQLFRNLA LWQQALVVML LSLAVDIIVF 120
  121 WAEFLVINVS FRPEVFWSSV VNGVLWPWLF LLMRKVRQQF AVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.69897
Match:	PF04093.3
Description:	No description for PF04093.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits