YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190408788, gi...
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190408788, gi....

Description	E-value	Query Range	Subject Range
RPS11A, RPS11B - Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E... gi\|190408788, gi... - gi\|190408788\|gb\|EDV12053.1\| ribosomal protein S11B [Saccharomyces cerevisiae RM11-1a], gi\|190405002\|... gi\|151942012, gi... - gi\|151946439\|gb\|EDN64661.1\| ribosomal protein S11B [Saccharomyces cerevisiae YJM789], gi\|151942012\|g... RS11B_YEAST, RS1... - 40S ribosomal protein S11-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS11B PE=1 ...	6.0E-54	[1..156]	[1..156]
rps1101, rps1102 - 40S ribosomal protein S11, 40S ribosomal protein S11 RS11B_SCHPO, RS1... - 40S ribosomal protein S11-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1102 PE=3 S...	4.0E-52	[1..156]	[1..152]
gi\|13516490, gi\|... - gi\|71895103\|ref\|NP_001026004.1\| ribosomal protein S11 [Gallus gallus], gi\|13516490\|dbj\|BAB40319.1\| r...	4.0E-52	[6..156]	[3..158]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-52	[3..155]	[1..159]
tr\|G3I004\|G3I004... - 40S ribosomal protein S11 OS=Cricetulus griseus GN=I79_016673 PE=3 SV=1 tr\|M3WAZ1\|M3WAZ1... - Ribosomal protein S11 OS=Felis catus GN=RPS11 PE=3 SV=1 RS11_MOUSE - 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=1 SV=3 tr\|G1TRM4\|G1TRM4... - pep:novel chromosome:oryCun2:2:132090106:132090582:1 gene:ENSOCUG00000027435 transcript:ENSOCUT00000... ENSCJAT00000000126 - null CCDS12769.1_1 - null gi\|114678487, gi... - gi\|55624058\|ref\|XP_517681.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146784... gi\|109125514, gi... - gi\|109125516\|ref\|XP_001115152.1\| PREDICTED: similar to ribosomal protein S11 isoform 2 [Macaca mulat... RPS11 - ribosomal protein S11 RS11_MACFA - 40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3 RS11_BOVIN - 40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3 gi\|187609269, gi... - gi\|73947970\|ref\|XP_533619.2\| PREDICTED: similar to ribosomal protein S11 [Canis familiaris], gi\|1876... gi\|124000091, gi... - gi\|60656399\|gb\|AAX32763.1\| ribosomal protein S11 [synthetic construct], gi\|124000091\|gb\|ABM87554.1\| ... RS11_RAT - 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3	1.0E-51	[6..156]	[3..158]
gi\|12836870 - gi\|12836870\|dbj\|BAB23843.1\| unnamed protein product [Mus musculus]	2.0E-51	[6..145]	[3..148]
gi\|166867 - gi\|166867\|gb\|AAA32866.1\| ribosomal protein S11 (probable start codon at bp 67)	4.0E-51	[2..154]	[20..180]
RS11_XENLA - 40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1	6.0E-51	[6..156]	[3..158]
gi\|2960399 - gi\|2960399\|dbj\|BAA25142.1\| 40S ribosomal protein S11 [Cyprinus carpio]	1.0E-50	[6..156]	[3..159]
gi\|15294033 - gi\|15294033\|gb\|AAK95193.1\|AF402819_1 40S ribosomal protein S11 [Ictalurus punctatus]	3.0E-50	[6..156]	[3..159]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTELTVQSE RAFQKQPHIF NNPKVKTSKR TKRWYKNAGL GFKTPKTAIE GSYIDKKCPF  60
   61 TGLVSIRGKI LTGTVVSTKM HRTIVIRRAY LHYIPKYNRY EKRHKNVPVH VSPAFRVQVG 120
  121 DIVTVGQCRP ISKTVRFNVV KVSAAAGKAN KQFAKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	347.502279
Match:	1k5xQ_
Description:	No description for 1k5xQ_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits