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View Structure Prediction Details

Protein: gi|221317400
Organism: Bacillus subtilis subsp. subtilis str. JH642
Length: 805 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221317400.

Description E-value Query
Range
Subject
Range
gi|52002141, gi|... - gi|52784304|ref|YP_090133.1| hypothetical protein BLi00484 [Bacillus licheniformis ATCC 14580], gi|5...
740.0 [0..1] [804..1]

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Predicted Domain #1
Region A:
Residues: [1-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKQLVLVG NGMAGVRAIE EILSVAKDEF QITIFGAEPH PNYNRILLSK VLQGDTDIKD  60
   61 ITLNDWDWYE ENNIQLYTNE TVIKVDTENK TVITDADRIQ PYDELILATG SVPFILPIPG 120
  121 ADKKGVTAFR DIKDTDTMLA ASKQYKKAAV IGGGLLGLEA ARGLLNLGMD VSVIHLAPFL 180
  181 MERQLDATAG RLLQNELEKQ GMTFLLEKQT EEIVGDDRVE GLRFKDGTSI EADLVVMAVG 240
  241 IRPNTTLGAE SGIPVNRGII VNDYMQTEIP HIYAVGECAE HRGIAYGLVA PLYEQAKVLA 300
  301 KHMCGIETKP YEGSVLSTQL KVSGVEVFSA GDFNESEEKK AIKVFDEQDG IYKKIVLRGN 360
  361 QIVGAVLFGD SSEGNRLFSM IQKEADISET SKISILQPLS QEAGTSITAA MSDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.69897
Match: 1q1rA
Description: Crystal Structure of Putidaredoxin Reductase from Pseudomonas putida
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 5.02724229572762 bayes_pls_golite062009
oxidoreductase activity 3.43361870342807 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 3.29217161930356 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 3.21437870557924 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.82626342384794 bayes_pls_golite062009
catalytic activity 2.35839632763616 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.56225257192351 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.41217196517959 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.67467912078052 bayes_pls_golite062009
NADH dehydrogenase activity 0.520416738053292 bayes_pls_golite062009
cation transmembrane transporter activity 0.437976266455047 bayes_pls_golite062009
ion transmembrane transporter activity 0.185889258290079 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [415-718]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIICGCNGVS KGAIIQAIQE KGCSSTDEIK ACTGASRSCG GCKPLVEEIL QHTLGSDFDA  60
   61 SAQKEAICGC TTLSRDEVVE EIKAKGLSHT REVMNVLGWK TPEGCSKCRP ALNYYLGMIN 120
  121 PTKYEDDRTS RFVNERMHAN IQKDGTYSVV PRMYGGVTNS TDLRKIADVV DKYEIPLVKM 180
  181 TGGQRIDLIG VKKEDLPKVW EDLDMPSGYA YGKTLRTVKT CVGEQFCRFG TQDSMALGIA 240
  241 LEKKFEGLNT PHKVKMAVSA CPRNCAESGI KDLGVVGIDG GWELYVGGNG GTHLRAGDLL 300
  301 MKVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.221849
Match: 2akjA
Description: Structure of spinach nitrite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors 4.43988753106114 bayes_pls_golite062009
sulfite reductase (NADPH) activity 3.89379115110861 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 3.13268224304716 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.13576429179797 bayes_pls_golite062009
oxidoreductase activity 2.13548955338201 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.78567689421035 bayes_pls_golite062009
catalytic activity 1.39967796334655 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [719-805]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNEEVLEYAG AYLQYYRETA NYLERTSAWL ERVGLSHVQS VLNDPEKRQE LNGRMNETLS  60
   61 VHKDPWKDFL EDKQTSKELF ENVVTTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1aopA
Description: SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle