YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161070
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	1099 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161070.

Description	E-value	Query Range	Subject Range
gi\|56416280, gi\|... - gi\|56416280\|ref\|YP_153355.1\| hypothetical protein SPA4315 [Salmonella enterica subsp. enterica serov... gi\|197096680, gi... - gi\|197365203\|ref\|YP_002144840.1\| hypothetical protein SSPA4006 [Salmonella enterica subsp. enterica ...	0.0	[1..1099]	[1..1099]
gi\|15834513, gi\|... - gi\|15834513\|ref\|NP_313286.1\| hypothetical protein ECs5259 [Escherichia coli O157:H7], gi\|13364737\|db... gi\|25391925, gi\|... - pir\|\|G86127 hypothetical protein Z5897 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15834513, gi\|... - gi\|15834513\|ref\|NP_313286.1\| hypothetical protein ECs5259 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|15804876, gi\|... - gi\|15804876\|ref\|NP_290917.1\| hypothetical protein Z5897 [Escherichia coli O157:H7 EDL933], gi\|125193... gi\|254796302, gi... - gi\|254796302\|ref\|YP_003081139.1\| hypothetical protein ECSP_5384 [Escherichia coli O157:H7 str. TW143...	0.0	[15..927]	[11..940]
gi\|90111736, gi\|... - gi\|90111736\|ref\|NP_418762.2\| hypothetical protein b4342 [Escherichia coli K12], gi\|87082428\|gb\|AAC77... gi\|85677084, gi\|... - gi\|89111053\|ref\|AP_004833.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	0.0	[1..488]	[1..488]
gi\|1790799, gi\|1... - gb\|AAC77298.1\| orf, hypothetical protein; conserved protein [Escherichia coli K12], gi\|16132163\|ref... YJIT_ECOLI - Hypothetical protein yjiT - Escherichia coli gi\|537183\|gb\|AAA... - ORF_o521 [Escherichia coli]	0.0	[1..488]	[17..504]
gi\|77953154, gi\|... - gi\|77953154\|ref\|ZP_00817564.1\| hypothetical protein MaquDRAFT_1724 [Marinobacter aquaeolei VT8], gi\|...	0.0	[11..1092]	[8..1097]
gi\|85694890, gi\|... - gi\|85711389\|ref\|ZP_01042448.1\| hypothetical protein OS145_01682 [Idiomarina baltica OS145], gi\|85694...	3.0E-89	[12..1087]	[4..1097]
gi\|53755239, gi\|... - gi\|54295407\|ref\|YP_127822.1\| hypothetical protein lpl2493 [Legionella pneumophila str. Lens], gi\|537...	6.0E-76	[2..1097]	[4..1124]
gi\|90410152, gi\|... - gi\|90410152\|ref\|ZP_01218169.1\| hypothetical protein P3TCK_05276 [Photobacterium profundum 3TCK], gi\|...	7.0E-71	[16..1088]	[8..1111]
gi\|254225982, gi... - gi\|75820065\|ref\|ZP_00750122.1\| hypothetical protein VchoV5_01001053 [Vibrio cholerae V51], gi\|254225...	3.0E-60	[16..1088]	[8..1105]
gi\|115589209, gi... - gi\|116053988\|ref\|YP_788430.1\| hypothetical protein PA14_03380 [Pseudomonas aeruginosa UCBPP-PA14], g...	1.0E-41	[12..625]	[25..641]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSEYASIL KCTPWLAKFL TRRGLKQPDH RPLYEYHATS EEYDELKRLL RAIGVPDGYK  60
   61 SDKGYAACFT LFCSEWYRRD YEREYGWAWE PIYKTIGISA SSSKMGKIIP KGLDGYWGRP 120
  121 VRFYDTERRN FLGSLFSEGG LPFRLLKESN SRFQSMFSLI LNQYDQAKSS NISTFALVHA 180
  181 AVEKSSLPVV FKEDTSVELI SRMAEQLVSL VQIYDLSNHT EPVKELERVH PKWRDSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVPLDDDTGT SFLNGLLRTA STESKPRLQK NKTTLCQFLW SENHPEALQA LISLPEELSF  60
   61 SIDIEPSTTR FELAIYEDGN EIASLGPAYA TLSNSQAKIK VRKREIKFYR RNPTVSLFIV 120
  121 ARAGGMFFGS NLLEGSEVAV GDVPLVFVSD KNEWLLQGQA SCSVRGSHVL IVLPKDGCLA 180
  181 SEHEDCDSGF SALGCHALTI KGRQDIIIKG DETYRIKIGR DQIIHTGFSF QGKRLNWTSY 240
  241 PDELFLGVPG I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [489-635]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQHSENLSTR HYKRFFNGTF IENCDVQEKM GAQFISVRNE NDETLLRKKI GILPNDFSLE  60
   61 IKNGQQANEG SVIITTQHPC LYSLKEKTLE VGRKRLPDST EIMMKAEGIP PASISLQITP 120
  121 NLTANPIVIW LPFPARGCLA FDKDEKP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [636-750]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKNLTINDL LGARAYLFGK NGEPTRYQLE LRLRSRSGMQ AWYEWHYSAG ECPVELTLYS  60
   61 LREHIDNLLS LEEGIDQTVD MRIKGGGSSF TWQIRRYKYS LDYDRGRQIL LANSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [751-941]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNRTGQIPSP VIMLLSEPER KVVLLTSRMS EGVPVGEFEL SSIIQKNGPW LVLPKPGEEA  60
   61 SFRPCFIAGE PVIQSDATAI QSLQKATQLF NPRSDVNTIM LVLEQMASDP AHSGWQFLRN 120
  121 LYDQFGYLPL ATFEVWRALV QHPQALAMSL FKFEMSIDYL SRIESEFPVF WEFLSITEVK 180
  181 RSATRFRAFL T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [942-1099]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKGAPEEMQI RLLYRMYQQL GTTFPTYASE VQLWLSQGKL PPVFPELTMK GIILEWYQEL  60
   61 LREHGESRWP EFGGPGLLRW YMSQQNPVID ISPDASYRYS VTLLPVFAAA VASGKTTFES 120
  121 VFENKPGAVF FLRQVRDFDS RWFNAIFQYC LLRNVTEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.876	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits