YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213864975
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213864975.

Description	E-value	Query Range	Subject Range
gi\|110613649, gi... - gi\|110804101\|ref\|YP_687621.1\| DNA-binding transcriptional activator CaiF [Shigella flexneri 5 str. 8...	226.0	[0..1]	[131..36]
gi\|209747062, gi... - pir\|\|B64724 transcription activator caiF - Escherichia coli (strain K-12), pir\|\|E85484 transcription... gi\|15829291, gi\|... - gi\|15829291\|ref\|NP_308064.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 str. ... gi\|30039844, gi\|... - gi\|30061602\|ref\|NP_835773.1\| transcriptional regulator of cai operon [Shigella flexneri 2a str. 2457... gi\|24050231, gi\|... - gi\|24111480\|ref\|NP_705990.1\| transcriptional regulator of cai operon [Shigella flexneri 2a str. 301]... gi\|1786218, gi\|4... - gi\|49175992\|ref\|NP_414576.3\| transcriptional regulator of cai operon [Escherichia coli K12], gb\|AAC7... gi\|15829291, gi\|... - gi\|15829291\|ref\|NP_308064.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7], gi\|... gi\|15799717, gi\|... - gi\|15799717\|ref\|NP_285729.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 EDL93... gi\|254037450, gi... - gi\|254037450\|ref\|ZP_04871527.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684055...	225.0	[0..1]	[131..36]
gi\|188490459, gi... - gi\|75515622\|ref\|ZP_00737779.1\| hypothetical protein Ecol5_01000727 [Escherichia coli 53638], gi\|1884... gi\|194439677, gi... - gi\|83584922\|ref\|ZP_00923579.1\| hypothetical protein Ecol1_01003881 [Escherichia coli 101-1], gi\|1944... gi\|85674291, gi\|... - gi\|89106918\|ref\|AP_000698.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 subst... gi\|124531332, gi... - gi\|124531332\|ref\|ZP_01701660.1\| transcriptional regulator of cai operon [Escherichia coli B], gi\|124... EG13451 - cai operon transcriptional activator / Transcriptional activator of cai operon gi\|161367661 - gi\|161367661\|ref\|NP_285729.2\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7 E... gi\|161485952 - gi\|161485952\|ref\|NP_705990.2\| DNA-binding transcriptional activator CaiF [Shigella flexneri 2a str. ... gi\|161486554 - gi\|161486554\|ref\|NP_835773.2\| DNA-binding transcriptional activator CaiF [Shigella flexneri 2a str. ... gi\|189375998, gi... - gi\|189375998\|gb\|EDU94414.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|170021608, gi... - gi\|170021608\|ref\|YP_001726562.1\| DNA-binding transcriptional activator CaiF [Escherichia coli ATCC 8... gi\|169887532, gi... - gi\|170079697\|ref\|YP_001729017.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 s... gi\|170680121, gi... - gi\|170680121\|ref\|YP_001742152.1\| transcriptional activatory protein CaiF [Escherichia coli SMS-3-5],... gi\|194434551, gi... - gi\|194434551\|ref\|ZP_03066809.1\| transcriptional activatory protein CaiF [Shigella dysenteriae 1012],... gi\|195937708 - gi\|195937708\|ref\|ZP_03083090.1\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7... gi\|208728939, gi... - gi\|208809138\|ref\|ZP_03251475.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|208735797, gi... - gi\|208814520\|ref\|ZP_03255849.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|162139821 - gi\|162139821\|ref\|NP_308064.2\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7 s... gi\|188014313, gi... - gi\|188014313\|gb\|EDU52435.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|189356105, gi... - gi\|189356105\|gb\|EDU74524.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|168762797, gi... - gi\|189366948\|gb\|EDU85364.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|254791171, gi... - gi\|254791171\|ref\|YP_003076008.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 s... gi\|168766725, gi... - gi\|189363999\|gb\|EDU82418.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|254160160, gi... - gi\|254160160\|ref\|YP_003043268.1\| DNA-binding transcriptional activator [Escherichia coli B str. REL6... gi\|187767703, gi... - gi\|187767703\|gb\|EDU31547.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|253976270, gi... - gi\|254286963\|ref\|YP_003052711.1\| DNA-binding transcriptional activator [Escherichia coli BL21(DE3)],... gi\|168781734, gi... - gi\|189000790\|gb\|EDU69776.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|251783601, gi... - gi\|251783601\|ref\|YP_002997905.1\| hypothetical protein B21_00037 [Escherichia coli BL21], gi\|24237587... gi\|189374974, gi... - gi\|189374974\|gb\|EDU93390.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|238899439, gi... - gi\|238899439\|ref\|YP_002925235.1\| DNA-binding transcriptional activator [Escherichia coli BW2952], gi... gi\|208821424, gi... - gi\|208821424\|ref\|ZP_03261744.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... EG13451 - cai operon transcriptional activator / Transcriptional activator of cai operon gi\|209161244, gi... - gi\|209399844\|ref\|YP_002268642.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 s... gi\|217320575, gi... - gi\|217324354\|ref\|ZP_03440438.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|218368440, gi... - gi\|218698454\|ref\|YP_002406083.1\| DNA-binding transcriptional activator CaiF [Escherichia coli IAI39]... CAIF_ECOLI - Transcriptional activatory protein caiF - Escherichia coli gi\|218430392, gi... - gi\|218703295\|ref\|YP_002410814.1\| DNA-binding transcriptional activator CaiF [Escherichia coli UMN026... CAIF_SHIFL - Transcriptional activatory protein CaiF OS=Shigella flexneri GN=caiF PE=3 SV=1	223.0	[0..1]	[131..1]
gi\|193070967, gi... - gi\|75234155\|ref\|ZP_00718559.1\| hypothetical protein EcolE1_01003916 [Escherichia coli E110019], gi\|1... gi\|191168902, gi... - gi\|75227864\|ref\|ZP_00714574.1\| hypothetical protein EcolB7_01003771 [Escherichia coli B7A], gi\|19116... gi\|75208890, gi\|... - gi\|75208890\|ref\|ZP_00709167.1\| hypothetical protein EcolB_01003896 [Escherichia coli B171], gi\|19442... gi\|75194255, gi\|... - gi\|75194255\|ref\|ZP_00704325.1\| hypothetical protein EcolH_01000029 [Escherichia coli HS], gi\|1571595... gi\|157077925, gi... - gi\|75189138\|ref\|ZP_00702405.1\| hypothetical protein EcolE_01002419 [Escherichia coli E24377A], gi\|15... gi\|209910485, gi... - gi\|209917226\|ref\|YP_002291310.1\| DNA-binding transcriptional activator CaiF [Escherichia coli SE11],... gi\|218359387, gi... - gi\|218552619\|ref\|YP_002385532.1\| DNA-binding transcriptional activator CaiF [Escherichia coli IAI1],... gi\|218693506, gi... - gi\|218693506\|ref\|YP_002401173.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 55989]... gi\|193066219, gi... - gi\|75255689\|ref\|ZP_00727455.1\| hypothetical protein EcolE2_01004278 [Escherichia coli E22], gi\|19306...	222.0	[0..1]	[131..1]
gi\|74310653, gi\|... - gi\|74310653\|ref\|YP_309072.1\| transcriptional regulator of cai operon [Shigella sonnei Ss046], gi\|738...	222.0	[0..1]	[131..36]
gi\|56126597, gi\|... - gi\|56412340\|ref\|YP_149415.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|197092752, gi... - gi\|197361277\|ref\|YP_002140912.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub...	222.0	[0..1]	[131..1]
gi\|91070669, gi\|... - gi\|91209095\|ref\|YP_539081.1\| transcriptional activatory protein CaiF [Escherichia coli UTI89], gi\|91... gi\|226902089, gi... - gi\|237704177\|ref\|ZP_04534658.1\| transcriptional activatory protein caiF [Escherichia sp. 3_2_53FAA],... gi\|26106355, gi\|... - gi\|26245958\|ref\|NP_751997.1\| Transcriptional activatory protein caiF [Escherichia coli CFT073], gi\|2... gi\|117622325, gi... - gi\|117622325\|ref\|YP_851238.1\| DNA-binding transcriptional activator CaiF [Escherichia coli APEC O1],...	222.0	[0..1]	[131..36]
gi\|75237173, gi\|... - gi\|75237173\|ref\|ZP_00721221.1\| hypothetical protein EcolF_01003976 [Escherichia coli F11], gi\|191174... gi\|161486339 - gi\|161486339\|ref\|NP_751997.2\| DNA-binding transcriptional activator CaiF [Escherichia coli CFT073] gi\|227837896, gi... - gi\|227885067\|ref\|ZP_04002872.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 83972],... gi\|162138513 - gi\|162138513\|ref\|YP_539081.2\| DNA-binding transcriptional activator CaiF [Escherichia coli UTI89] gi\|218363743, gi... - gi\|218556974\|ref\|YP_002389887.1\| DNA-binding transcriptional activator CaiF [Escherichia coli S88], ... gi\|110341839, gi... - gi\|110640247\|ref\|YP_667975.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 536], gi\|...	219.0	[0..1]	[131..1]
gi\|27528364 - gi\|27528364\|emb\|CAD48584.1\| putative transcriptional regulatory protein [Proteus sp. LE138]	215.0	[0..1]	[131..1]
gi\|82775436, gi\|... - gi\|82775436\|ref\|YP_401783.1\| transcriptional regulator of cai operon [Shigella dysenteriae Sd197], g...	201.0	[0..1]	[118..36]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEKYVERPL YLLIADWMMA ENRWITAREI SRQFDIEHCK AINTLSYILS EVGEIVCEVK  60
   61 MIPNQIAGRG CQCQRLVKVV SIDSQLYRRL NHNLQERKVS VAKAPRLSAV PPTELNREQK 120
  121 WQMMLSKSMR R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits