YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224503503
Organism:	Listeria monocytogenes FSL R2-561
Length:	664 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224503503.

Description	E-value	Query Range	Subject Range
SYM_LISIN - Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=metG PE=3 SV=1 SYM_LISIN - Methionine--tRNA ligase OS=Listeria innocua GN=metG PE=3 SV=1	459.0	[0..1]	[664..1]
SYM_LISMF - Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metG PE=3 SV=1	456.0	[0..1]	[664..2]
gi\|47015418, gi\|... - gi\|47096170\|ref\|ZP_00233769.1\| methionyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854], g...	456.0	[0..1]	[664..2]
SYM_BACHD - Methionyl-tRNA synthetase OS=Bacillus halodurans GN=metG PE=3 SV=1 SYM_BACHD - Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	451.0	[0..1]	[664..1]
gi\|89149759, gi\|... - gi\|89202242\|ref\|ZP_01180970.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s...	449.0	[0..1]	[664..1]
gi\|52078533, gi\|... - gi\|52783895\|ref\|YP_089724.1\| methionyl-tRNA synthetase [Bacillus licheniformis ATCC 14580], gi\|52346...	449.0	[0..1]	[664..1]
gi\|56378408, gi\|... - gi\|56418566\|ref\|YP_145884.1\| methionyl-tRNA synthetase (methionine--tRNA ligase) [Geobacillus kausto...	445.0	[0..4]	[664..2]
gi\|42735032, gi\|... - gi\|42779117\|ref\|NP_976364.1\| methionyl-tRNA synthetase [Bacillus cereus ATCC 10987], gi\|42735032\|gb\|...	444.0	[0..1]	[664..1]
SYM_BACSU - Methionine--tRNA ligase OS=Bacillus subtilis GN=metG PE=3 SV=1 SYM_BACSU - Methionine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=metG PE=3 SV=1 gi\|221312169 - gi\|221312169\|ref\|ZP_03593974.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NC... gi\|221317102 - gi\|221317102\|ref\|ZP_03598396.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH... gi\|221321365 - gi\|221321365\|ref\|ZP_03602659.1\| methionyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SM...	444.0	[0..1]	[664..1]
gi\|228657873, gi... - gi\|229125556\|ref\|ZP_04254589.1\| Methionyl-tRNA synthetase [Bacillus cereus BDRD-Cer4], gi\|228657873\|... SYM1_BACCR - Methionine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N...	443.0	[0..1]	[664..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEEKNTFYI TTPIYYPSGK AHIGHAYTTV AGDAMARYKR LKGYDVFYLT GTDEHGQKIQ  60
   61 AKAKERGISE QEYVDEIAEG FQELWKKLEI SNTDFIRTTQ DRHKTSVEKI FEQLLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.221849
Match:	2csxA
Description:	Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [117-664]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGDIYLGEYE GWYSVSDEEY FTETQLEEVY KDENGKVIGG KAPSGNEVEL VKEESYFFRM  60
   61 SKYADRLVEY YNSHPEFILP ESRKNEMINN FIKPGLEDLA VSRTTFDWGI KVPGNPKHVV 120
  121 YVWIDALSNY ITALGYNTDN DTKFQKYWPA DVQIVGKEIV RFHTIYWPIM LMALDLPLPK 180
  181 MVFGHGWILM KDGKMSKSKG NVVDPYMLID RYGLDALRYY LLREVPFGSD GLFTPEDFVD 240
  241 RVNFDLANDL GNLLNRTVAM INKYFDGEIP AYQGNVTEFD QILVDFKNNV VKEYEGSMDH 300
  301 MQFSVALNQL WSLISRTNKY IDETAPWALA KDEDKRTELA SVMTHLAENL RIIAVLLQPF 360
  361 LTRTPGEIFL QLGLQEENLK KWDSIYGYGE IPAGTTVVKK GTPIFPRLDA EVEVTYIQDE 420
  421 MKGSAPAPAE EVAEVEALET PQIGIEDFDK IDLRVAEVKQ VDKVKKADKL LCFQLDLGEG 480
  481 KLRQVLSGIA EFYQPEELIG KKVIVVSNLK PVKLRGLMSE GMILSGEKDG KLSVIEASSA 540
  541 LPNGAKVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	1wz2A
Description:	The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits